Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03800 ATGCACTCACAAGTGGAAAAATTAGAAGACCTTATGATGTTGGACTCCGATGATGATGTTCGAGTTGTAGGGATTTCTGGAATGGGCGGAATAGGGAAGACAACTCTTGCTAATGTTTTGTATGCTAGAATCTCTAATCAATTTGAAGCTTGCTGCTATATTGAAGATGTAAGTAAAACTTATGGAGGTTATGGCCCAACTGAAGTGCAAAAGCAACTTCTTTGTCAAACTCTCAAAGAAGAAAATCTTCAGATATACAATGGTTATATGGCATCTAATTTGATTCGAACTAGGCTGTGTCAAATAAAATCCCTTGTAATCCTTGATAATGTTGATAAAGTTGAACAATTGGATAAATTAGCCATGAGACGAGAGTGTCTAGGTACTGGGAGCAGAATGATCGTAATTTCTAGAGATAATCATATCTTGAGAGAGCATGTAGATGAAGTTTACGAAGTTCAACTCTTGGATGATAGTAATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCTTGACCAGTTACACAGACTTGACAAATGATGTACTACAATATGCCAATGGCCATCCATTAGCAATTAAAGTATTGGGATCATTTTTGTATGGTCGAGATGTCTCTGAATGGAGAAGTGCATTGGAAAGATTAAGAGAGAATCCAATGGCAGGTATTATGGATGTACTCCGAATTAGTTTTGATGGGCTATTGGATACAGAAAAGGGTATATTTCTTGATATTGCTTGTTTCTTTTACATAGAACGTGAGACATACGTGAAGGAAGTTTTAGATTTTCGTGGATTTCATCCTGAAATTGGTTTAAGTGTTCTCGTTGATAGGTCATTCATTACTTGTGAGTGTGGGGGAATTTATATGCATGATTTATTCAGAGAACTAGGCAAGAGTATCGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAATAGATTGTGGGACTACAAGGATGTCCACAAAGTTATGTCAGAAAACATGGAAACAGAAAACCTTGAAGCCATAGTTCTGAAGTCTTATTGTGATAACATTGATGAAATAAAAGCAATGTCAACATTGAGGGCAGAAAGTTTAGCACAAATGAATCGCCTTAAATTGCTCGAGCTGTGGAATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGGTATCTATGTTGGGATAAATATCCTTTCACTTGTTTGCCATCGAGTTTTGAGCCGGATAAACTTGTTGAACTGATCCTACCTCATAGCAACATCAGGCAACTATGGGAGGGCAAAAAGCCTCTTCATAATTTGACACGTCTTGATCTCTCTCACTCGGAAAATCTTACTATGATGCCAAGTTTTTTGGAGATTCCAAATCTTGAGTTCCTAAATCTTGAAGGATGCATAAAACTTGTGCAGATTGATCCATCCATTGGTATCTTAAGAAGGCTTTCcgaattaaatttgaaaaattgtacAAATCTTGTTAGTATTCCTAACAGAATTTTTGGTCTGAGTTCtcttaaatctctaaatctcTCAGGCTGCCCAAATTTTTTGTTAGAGGGACAAAGAAAAATAGAACATTTGGAGATGCTTGAAAACAACGAGATTACCACCCAATACCAACCAACATCCTCCATCTACAAAGTTTTAAAGTCATCCTTccgatttttaatttttcaaaaaagtaGAGATCCTCCAATTGGTTTATTGTTGCCTTTGGTGTCTCGTTTGTCATGTTTACAACATCTAGACCTAAGTTTCTGCAATCTTCCTCAAATCCCTACTGCCATTGGGTGGTTACACTGCTTAGATACACTAAATTTGTCCGGTAACAATTTTGTTACATTACCTAGCTTCAAAGAACTTTTTAAACTTATAGATTTGAATTTGGAGCACTGTAAGCAGCTGAAATATTTACCTGAACTCCCATCAGAAACTGTTTTGTCAGTAAGAAGCACTTGTTGtgtattaaatatttttggttGCCCCAGTTTAACTGACATAGAATGTTGTTATAGAATGGTTTTATCTTGGTTTATACAACTCCTTCTTCAGGTGCTTACTCCATCCTTTTTCCTTTTGTATATGgttcttttattatttgattga 2115 0.3485 MHSQVEKLEDLMMLDSDDDVRVVGISGMGGIGKTTLANVLYARISNQFEACCYIEDVSKTYGGYGPTEVQKQLLCQTLKEENLQIYNGYMASNLIRTRLCQIKSLVILDNVDKVEQLDKLAMRRECLGTGSRMIVISRDNHILREHVDEVYEVQLLDDSNALQLFCRKAFKSDDILTSYTDLTNDVLQYANGHPLAIKVLGSFLYGRDVSEWRSALERLRENPMAGIMDVLRISFDGLLDTEKGIFLDIACFFYIERETYVKEVLDFRGFHPEIGLSVLVDRSFITCECGGIYMHDLFRELGKSIVREKSPKEPRKWNRLWDYKDVHKVMSENMETENLEAIVLKSYCDNIDEIKAMSTLRAESLAQMNRLKLLELWNLNFSGSLNFLSSELGYLCWDKYPFTCLPSSFEPDKLVELILPHSNIRQLWEGKKPLHNLTRLDLSHSENLTMMPSFLEIPNLEFLNLEGCIKLVQIDPSIGILRRLSELNLKNCTNLVSIPNRIFGLSSLKSLNLSGCPNFLLEGQRKIEHLEMLENNEITTQYQPTSSIYKVLKSSFRFLIFQKSRDPPIGLLLPLVSRLSCLQHLDLSFCNLPQIPTAIGWLHCLDTLNLSGNNFVTLPSFKELFKLIDLNLEHCKQLKYLPELPSETVLSVRSTCCVLNIFGCPSLTDIECCYRMVLSWFIQLLLQVLTPSFFLLYMVLLLFD 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03800 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Tsu05g03800 704 Gene3D - 1 153 IPR027417 -
Tsu05g03800 704 SMART LRR_typ_2 481 505 IPR003591 -
Tsu05g03800 704 SMART LRR_typ_2 602 627 IPR003591 -
Tsu05g03800 704 SMART LRR_typ_2 579 600 IPR003591 -
Tsu05g03800 704 PRINTS Disease resistance protein signature 22 37 - -
Tsu05g03800 704 PRINTS Disease resistance protein signature 98 112 - -
Tsu05g03800 704 PRINTS Disease resistance protein signature 432 448 - -
Tsu05g03800 704 PRINTS Disease resistance protein signature 190 204 - -
Tsu05g03800 704 Gene3D Ribonuclease Inhibitor 569 687 IPR032675 -
Tsu05g03800 704 Pfam Leucine Rich Repeat 413 432 IPR011713 -
Tsu05g03800 704 Gene3D - 155 239 IPR042197 -
Tsu05g03800 704 Gene3D Ribonuclease Inhibitor 334 545 IPR032675 -
Tsu05g03800 704 ProSiteProfiles Leucine-rich repeat profile. 604 625 IPR001611 GO:0005515
Tsu05g03800 704 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 659 IPR044974 GO:0006952
Tsu05g03800 704 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 659 - -
Tsu05g03800 704 SUPERFAMILY L domain-like 294 683 - -
Tsu05g03800 704 Pfam NB-ARC domain 4 224 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03800 Tsu-Chr5 49207770 49211918 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03800 19 675 WRKY Transcription Factor Family AT5G45050 30.725 4.45e-77 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03800 - - mtr:MTR_4g080777 1017.3