Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03798 ATGGCTTGTAGTAGCAACCAAATTGTCTCTTCATCTAGAATGACATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACACGCAACAATTTCACTGATCACCTTTTTGGTGCTTTTCATAGAAAAGGCATTGTTGCCTTCAAGGATGATACAAAGCTCAAGAAAGGGGAAGATATATCATCTGAGCTTCTAAAAGCCATTGAAGGATCTCAAATTTTGATTGTTATCTTCTCAAGAAACTATGCTTCTTCCAAATGGTGCTTGCGGGAACTAGCAAAAATTGCTGAATGCGAAGTATTAGGACAAACTGTGCTACCTATTTTCTATGATGTGAGTCCATCTGAGGTACGAAAGCAAAGTGGAGATTTTGAAAAAGCGTTTAGGGAGCATGGattcaaagaaaaattagaGGAAGTGCAAAGATGGAGGGGAGCTCTAACACAAGTAGCCAACCTCTCTGGTTATGATTTAAAGGATAAGGGACAATATGCAGAGATTGAAAGAATTGTTAAAGATGTAACAAGCTTATTGGGTCACAAATTTTCAACAATACCTGATGATATAGTTGGGATGCACTCACAAGTGGAAAAATTAGAAGACCTTATGATGTTGGACTCCGATGATGATGTTCGAGTTGTAGGGATTTCTGGAATGGGCGGAATAGGGAAGACAACTCTTGCTAATGTTTTGTATGCTAGAATCTCTAATCAATTTGAAGCTTGCTGCTATATTGAAGATGTAAGTAAAACTTATGGAGGTTATGGCCCAACTGAAGTGCAAAAGCAACTTCTTTGTCAAACTCTCAAAGAAGAAAATCTTCAGATATACAATGGTTATATGGCATCTAATTTGATTCGAACTAGGCTATGTCAACTAAAATCCCTTGTAATCCTTGATAATGTTGATCAAGCTGAACAACTGGATAAATTAGCCATGAAACGAGAGTGGCTAGGTACTGGGAGCAGAATGATCGTAATTTCTAGAGATTGTCATATCTTGAGAGAGCATGTAGATGAAGTTTACGAAGTTCAACGCTTGGATCACAGTAATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCTTGACCGGTTACACAGACTTGACAAATGATGTACTAAAATATGCCAATGGCCATCCATTAGCAATTAAAGTATTGGGATCATTTTTGTATGGTCGAGATGTCTCTGAATGGAGAAGTGCATTGGAAAGATTAAGAGAGAATCCAATGGCAGGTATTATGGATGTACTCCGAATTAGTTTTGATGGGCTATTGGATACAGAAAAGGGTATATTTCTTGATATTGCTTGTTTCTTTGTAAGAGAAAGGGAGATATATGTGAAGAAAGTTTTAGAATTTCGTGGATTTCATCCTGAAATTGGTTTAAGAGTTCTCCATGATAAGTCATTCATTACTTTTAATCGATGGGGGCGTTTGTGTATGCATAATTTATTCAAAGAACTCGGCAAGAGTATCGTTAGAGAAAAATCGCCCAAAGAACCAAGAAAGTGGAATAGATTGTGGGACTACAAGGATGTCCACAAAGTTATGTCAGAAAACATgGAAACAAAAAACCTTGAAGCGATAGTACTGAAGCGTTCTGCAAacattgaaaaaatacaaacaatgtCAACTTTGAGGGCAGAAAGTTTATCACAAATGAAAAGCCTTAAATTGCTCAAGCTGTGGCATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGGTATCTATGTTGGGATAAATATCCTTTCACAAGTTTGCCATCGAGTTTTGAGCCGGATAAACTTGTTGAACTGATACTACCTCATAGCAACATCAGGCAACTATGGGAGGGCACAAAGTCTCTTCATTATTTGACACATCTTGATCTCTCTCACTCGAGAAATCTTATTATGATGCCAAGTTTTTTGGAGATTCCAAATCTTGAGTTCCTAGATCTTCAAGGATGCATAAAACTTGCGCAGATTGATCCATCCATTATTACCTTAAGAAGACTATCCAcgttaaatttgaaaaattgtacAAATCTTGTTAGTATTCCTAACAAAATTTTTGGTCTGACTTCTCTTCAATCCCTAGATCTCTCAGGCTGCCCAAATTTTTGGTTCGGGGGACAAAGAAAAATAGAACATTTGGAGATGCTTGAAAACAAAGAAACTACTACCGAATACCAACCAACATCCTTCATCTACAAAGTTTTAAAGTCACCCTtcagattttttaattttcaaaaaagtaGAAATCCAATTGGTTTATTGTTGCCTTTGGTGTCTCCTTTGTCATGTTTACAACATCTACGCCTAAGTTTCTGCAATCTTCCTCAAATCCCTGCAGCTATTGGGTGGTTACACTGCTTAGAAACACTAAATTTGAGGGGTAACAATTTTGTTACATTACCTAGCTTCAAagaactttttaaacttaaagATTTGAACTTGGAGCACTGTAAGCAGCTGAAATATTTACCTGAACTCCCATCAAAAACTGTCTTTCCAGTAAGAAGCACCtattatgtattaaatatgTTTGGTTGCCCCAGTTTAACCGACATAGAATGTTGTTATGGAATGGTTTTATCTTGGATGATACAACTCCTTCAGGTGCACATGCAATCCGATCTCCCAACTGGTGGGATTGAGATTGTGATTCCTAGAATGGAAATTCCAATGTGGTTCAATAAACAAAATGCGGGCAGTTCAATAAGCATGGAACCATTACCCAATATGGATGACAAGAATTTGATAGGTGTTGCTGTTGCTTCCTGCATAACACTTGTAGCACATGATTATCCAACTGAAATGTCACCTGGTATTAGTTTCGGTTTTAAAGgaaaaaatttattcactCGATGGATTTTATAA 2892 0.3589 MACSSNQIVSSSRMTWKYDVFVSFRGEDTRNNFTDHLFGAFHRKGIVAFKDDTKLKKGEDISSELLKAIEGSQILIVIFSRNYASSKWCLRELAKIAECEVLGQTVLPIFYDVSPSEVRKQSGDFEKAFREHGFKEKLEEVQRWRGALTQVANLSGYDLKDKGQYAEIERIVKDVTSLLGHKFSTIPDDIVGMHSQVEKLEDLMMLDSDDDVRVVGISGMGGIGKTTLANVLYARISNQFEACCYIEDVSKTYGGYGPTEVQKQLLCQTLKEENLQIYNGYMASNLIRTRLCQLKSLVILDNVDQAEQLDKLAMKREWLGTGSRMIVISRDCHILREHVDEVYEVQRLDHSNALQLFCRKAFKSDDILTGYTDLTNDVLKYANGHPLAIKVLGSFLYGRDVSEWRSALERLRENPMAGIMDVLRISFDGLLDTEKGIFLDIACFFVREREIYVKKVLEFRGFHPEIGLRVLHDKSFITFNRWGRLCMHNLFKELGKSIVREKSPKEPRKWNRLWDYKDVHKVMSENMETKNLEAIVLKRSANIEKIQTMSTLRAESLSQMKSLKLLKLWHLNFSGSLNFLSSELGYLCWDKYPFTSLPSSFEPDKLVELILPHSNIRQLWEGTKSLHYLTHLDLSHSRNLIMMPSFLEIPNLEFLDLQGCIKLAQIDPSIITLRRLSTLNLKNCTNLVSIPNKIFGLTSLQSLDLSGCPNFWFGGQRKIEHLEMLENKETTTEYQPTSFIYKVLKSPFRFFNFQKSRNPIGLLLPLVSPLSCLQHLRLSFCNLPQIPAAIGWLHCLETLNLRGNNFVTLPSFKELFKLKDLNLEHCKQLKYLPELPSKTVFPVRSTYYVLNMFGCPSLTDIECCYGMVLSWMIQLLQVHMQSDLPTGGIEIVIPRMEIPMWFNKQNAGSSISMEPLPNMDDKNLIGVAVASCITLVAHDYPTEMSPGISFGFKGKNLFTRWIL 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03798 963 Gene3D - 180 346 IPR027417 -
Tsu05g03798 963 SUPERFAMILY L domain-like 552 864 - -
Tsu05g03798 963 Pfam Leucine Rich Repeat 605 624 IPR011713 -
Tsu05g03798 963 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 849 IPR044974 GO:0006952
Tsu05g03798 963 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 157 IPR035897 -
Tsu05g03798 963 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 849 - -
Tsu05g03798 963 ProSiteProfiles Leucine-rich repeat profile. 795 816 IPR001611 GO:0005515
Tsu05g03798 963 Gene3D Ribonuclease Inhibitor 515 735 IPR032675 -
Tsu05g03798 963 Pfam TIR domain 17 176 IPR000157 GO:0007165
Tsu05g03798 963 PRINTS Disease resistance protein signature 695 711 - -
Tsu05g03798 963 PRINTS Disease resistance protein signature 214 229 - -
Tsu05g03798 963 PRINTS Disease resistance protein signature 290 304 - -
Tsu05g03798 963 PRINTS Disease resistance protein signature 382 396 - -
Tsu05g03798 963 Gene3D - 347 431 IPR042197 -
Tsu05g03798 963 ProSiteProfiles TIR domain profile. 16 179 IPR000157 GO:0007165
Tsu05g03798 963 SUPERFAMILY "Winged helix" DNA-binding domain 419 523 IPR036390 -
Tsu05g03798 963 SMART till_3 17 154 IPR000157 GO:0007165
Tsu05g03798 963 Gene3D Ribonuclease Inhibitor 752 882 IPR032675 -
Tsu05g03798 963 Pfam NB-ARC domain 196 416 IPR002182 GO:0043531
Tsu05g03798 963 Gene3D - 14 179 IPR035897 -
Tsu05g03798 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 441 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03798 Tsu-Chr5 49190652 49194291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03798 18 811 WRKY Transcription Factor Family AT4G12020 30.826 8.53e-89 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03798 - - mtr:MTR_4g080777 1371.3