Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03781 ATGTCAAGTTCATCATGCATACCAATGGAACAAGAAAATCACGGTATGTTCACAATTCATCAAACACAAAACACCGTAATTTGTTGCGTATGCGCGTCTTTAATGAAGCCAAACGCTGCCAATATATGCTGTAAATGTTTGCTCGCGAAAGAAGACATCACATTAGGGTTATTCAAGAAAGTAACCCTAATGCATTGTCCAGAATGTAAAAGCTATTTTCAACCACCAAATACATGGATCAAATTACAATTTGATTCAAAAGAGCTTCTAgctttttgtttaaaaaagctagaaaaaaacatgaaatccaaaaatgttagattagttAATGCTTATACAGTTCCAACTGAACCGAATTCGAAGCGGATTAGAGTTAAGGTTTATGTTCAAAAAGAGGTTTTGAATGGAACAATTGTGGAATGTTCTTATGATGTTGAATATGTTCAACATAGTCATATGTGTGGAGGTTGTACTAAAGTTTTTGCTAATCCTGATCAATGGGTTTCTGTTGTGCAATTACGACAACATGTTTCGCATATGCGGACTTTTTTGCAGTTGGAACAAGCTATTTTGAAACACGGTGTTGCTAGTAATGCTTTGAGGATTAAGCAAATGAAACAAGggattgatttcttttttactaAAGAAAGTTATGCTAGAAAGTTTTTGGATTTTATAAAGGGACAAGTTCCGGTTAAGATCTGTGATAGTAAGCAACTTGTTTCTCATGATACTAAGAGTAATGATTATAATTATAGATACACTTTTTCTGTTGAGATTTGTCCTGTTTGTCGTGAGGATTTGGTTTTACTACCTCCTAAGGTTTGTTCGAGTTTGGGAAATCTTGGTCCTATTATGATTTGTACTAAGGTTACAAATGTCATTGCTTTGGTTGATCCGGTTACTTCGACACGCTGTTTCTTAGATGGTGATATGTACTGGAGGGCACCCTTTACGTCTTTACTCACTAGTAAAGAGTTGGTGGAATATATTGTGCTTGATGTTGAGGAGGTTTATTCGGAGGTTGCTATTGATGGAAAGAAATTTGGTTTGGCTAATGCTGAGGTTGCTCGTGTGAAAGATTGGGGAAAGAATGATACAAGATTTAATATCAAGACTCATCTGGGTTATCTTTTGCAAACCGGTGACCATGCTCTTGGTTATGATTTGTGTGGAGTGAATAGTGTTGATAATGAGATTGCATTGGACGAGTATATAGGAGGTGGTGCAATTTTAATAAAGAAGACATATGAAGAGAAATGCCAGAAGAGATGTAGGAAGCCTCTGCCGTACTTAAAAGATCTAGAAGAAATGCCTGATATGATGATGGGCCTATCATTAGGCGGTGAAGAGCCACTTTCTGATACGTTGTATGAGCAGATGTGTGGTCTTTATCTGAATGATGAGGAATATGAGGCGAAGAGGAGAAGGTGA 1434 0.3536 MSSSSCIPMEQENHGMFTIHQTQNTVICCVCASLMKPNAANICCKCLLAKEDITLGLFKKVTLMHCPECKSYFQPPNTWIKLQFDSKELLAFCLKKLEKNMKSKNVRLVNAYTVPTEPNSKRIRVKVYVQKEVLNGTIVECSYDVEYVQHSHMCGGCTKVFANPDQWVSVVQLRQHVSHMRTFLQLEQAILKHGVASNALRIKQMKQGIDFFFTKESYARKFLDFIKGQVPVKICDSKQLVSHDTKSNDYNYRYTFSVEICPVCREDLVLLPPKVCSSLGNLGPIMICTKVTNVIALVDPVTSTRCFLDGDMYWRAPFTSLLTSKELVEYIVLDVEEVYSEVAIDGKKFGLANAEVARVKDWGKNDTRFNIKTHLGYLLQTGDHALGYDLCGVNSVDNEIALDEYIGGGAILIKKTYEEKCQKRCRKPLPYLKDLEEMPDMMMGLSLGGEEPLSDTLYEQMCGLYLNDEEYEAKRRR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03781 477 Pfam NMD3 family 28 260 IPR007064 -
Tsu05g03781 477 PANTHER 60S RIBOSOMAL EXPORT PROTEIN NMD3 12 428 - -
Tsu05g03781 477 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 12 428 IPR039768 GO:0043023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03781 Tsu-Chr5 49093225 49095112 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g03781 NMD3 2.8e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03781 K07562 - gmx:100799026 551.592