Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03780 ATGGATACCAGTAAGCTCCAGTCTCGTTTCTCCTTCGGCAGACAATCATCACTCGCACCGGATCACCAAGATTCCACCGCCACCGTCAACGACTCAGTTACGGAGGCAATTGATCCTCCTGTTCGGTTAATGTATTTAACAAACGAAGGAGACTTAGAAGCAATCAACGAACTTTTAGACGGTGGAAGTAACGTCAATTTCAGAGATATTGACGGTCGCACCGCTCTTCATATCGCCGCATGTCAAGGACGCACCGACGTTGTTCAATTGTTGCTTCAAAGAGGTGCTGAAGTTGATCCTCAAGATCGTTGGTGTAGCACTCCTCTTGCTGATGCATTGTATTACAAGAATCATGATGTTGTTAAACTTTTGGAGCAACATGGTGCTAAACCTCCGGTGGCTCCTATGCATGTCCAGAATGCTCGGGAAGTCCCAGAATATGAGATTGATCCTTCTGAACTTGATTTTACAAATAGTGTTTGTATAACAAAGGGAACTTTCCGGAGAGCAGTATGGCGTGGAATTCAGGTAGCTGTTAAGACTCTTGGGGAGGAAGTGTTCACTGATGATGATAAAGTAAAGGCATTCCATGATGAGCTTACATTACTTCAGAAAGTAAGGCATCCAAATGTTGTCCAATTTTTGGGTGCCGTTACACAAAGCACCCCAATGATGATTGTCACAGAATATCTACCCCAGGGGGATCTTCGTGACTACTTGAAGCGGAAAGGTGCAGTAAAACCAATAATAGCTGTGAAGTTTGCACTTGATATTGCTAGGGGGATGAATTATTTGCATGAACATAAACCTGAAGCCATTGTACACCGAGATCTTGAGCCTTCAAATATTCTCCGGGATGATTCTGGACATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTCACTCAAAATCACTAAAACAGTCAAAGAAGACAAACCCGTGACATGCGAGGATACAtcatGGCGGTATGTTGCACCAGAGGTCTACAGAAATGAAGAATATGACACCAAAGCAGATGTCTTTTCCTTTTCTCTGATATTACAAGAGATGATTGAAGGTTGTCCTCCATTTTATAGAAAGCCAGAAAAAGAAGTTCCTAAAGCATATGTGGAAAATGAGCGTCCACCATTCAGGGCTGCACCAAAGCTTTATGCTCATGGATTAAAAGATttaattgaggaatgttggcaTGGAGAACCATACCGAAGACCAACATTTAGGCAAATAATTGGAAGGTTGGATAAGATAAACCACCATCTTGCTCAAAAGAGGCGCTGGAAGGCTCTGGCTCCTTCATGCATCTGGAATCTGCAGGCCTTGTGTAAGGGGTATCCTACAAGTCCTGGTAGCAGATCATCTCGCTCTACGGTTAGATGA 1377 0.4277 MDTSKLQSRFSFGRQSSLAPDHQDSTATVNDSVTEAIDPPVRLMYLTNEGDLEAINELLDGGSNVNFRDIDGRTALHIAACQGRTDVVQLLLQRGAEVDPQDRWCSTPLADALYYKNHDVVKLLEQHGAKPPVAPMHVQNAREVPEYEIDPSELDFTNSVCITKGTFRRAVWRGIQVAVKTLGEEVFTDDDKVKAFHDELTLLQKVRHPNVVQFLGAVTQSTPMMIVTEYLPQGDLRDYLKRKGAVKPIIAVKFALDIARGMNYLHEHKPEAIVHRDLEPSNILRDDSGHLKVADFGVSKSLKITKTVKEDKPVTCEDTSWRYVAPEVYRNEEYDTKADVFSFSLILQEMIEGCPPFYRKPEKEVPKAYVENERPPFRAAPKLYAHGLKDLIEECWHGEPYRRPTFRQIIGRLDKINHHLAQKRRWKALAPSCIWNLQALCKGYPTSPGSRSSRSTVR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03780 458 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Tsu05g03780 458 PRINTS Ankyrin repeat signature 72 87 IPR002110 GO:0005515
Tsu05g03780 458 PRINTS Ankyrin repeat signature 120 134 IPR002110 GO:0005515
Tsu05g03780 458 SMART ANK_2a 71 100 IPR002110 GO:0005515
Tsu05g03780 458 SMART ANK_2a 38 67 IPR002110 GO:0005515
Tsu05g03780 458 SMART ANK_2a 104 133 IPR002110 GO:0005515
Tsu05g03780 458 Gene3D Transferase(Phosphotransferase) domain 1 152 422 - -
Tsu05g03780 458 PRINTS Tyrosine kinase catalytic domain signature 338 360 IPR001245 GO:0004672|GO:0006468
Tsu05g03780 458 PRINTS Tyrosine kinase catalytic domain signature 228 241 IPR001245 GO:0004672|GO:0006468
Tsu05g03780 458 PRINTS Tyrosine kinase catalytic domain signature 384 406 IPR001245 GO:0004672|GO:0006468
Tsu05g03780 458 PRINTS Tyrosine kinase catalytic domain signature 267 285 IPR001245 GO:0004672|GO:0006468
Tsu05g03780 458 MobiDBLite consensus disorder prediction 1 33 - -
Tsu05g03780 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 441 - -
Tsu05g03780 458 SUPERFAMILY Protein kinase-like (PK-like) 161 413 IPR011009 -
Tsu05g03780 458 Pfam Protein tyrosine and serine/threonine kinase 167 412 IPR001245 GO:0004672|GO:0006468
Tsu05g03780 458 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 10 441 - -
Tsu05g03780 458 Gene3D - 34 143 IPR036770 -
Tsu05g03780 458 ProSiteProfiles Protein kinase domain profile. 156 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03780 458 PIRSF ILK 2 435 - -
Tsu05g03780 458 CDD STKc_MAP3K-like 162 413 - -
Tsu05g03780 458 SUPERFAMILY Ankyrin repeat 43 134 IPR036770 -
Tsu05g03780 458 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Tsu05g03780 458 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03780 Tsu-Chr5 49082121 49087894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03780 1 427 MAP Kinase Kinase Kinase AT4G18950 65.893 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Tsu05g03780 PK_Tyr_Ser-Thr 5.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03780 - - gmx:100795964 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03780 05 49082121 49087894 Tsu07g01062 07 8870389 8876868 PCT