Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03765 ATGTTTGGTGAAATGGAACACAAGCAAGAACAAGATAATGGTAAccagaataataataataacatgtcTGGTAATGGTATTGATGTTACTCTGATATCTCCTAAAGTTCCGAAATCAGTTTCACCGGTTTCTTCTGCAGCTGAGGGGGAGACTTTAAAGCGGCCTCGCGGTCGACCGGCCGGATCGAAAAACAAGCCAAAGCCACCAATCATTGTCACTAGAGATAGTGCTAATGCACTTAAAGCTCATGCTATGGAAGTGAGCTCTGGCTGTGATGTGAACGAGAGTTTGTTAAACTTTGCAAGGAGAAAGCAACGTGGTCTTTGTATACTTAACGGTACTGGTTGTGTAACAAATGTAACGCTGCGCCAACCGGCTTCATCTGGTGCAATTGTGACTCTTCATGGTCGATTTGAGATTCTCTCGTTGTTGGGGTCGATTCTTCCCCCACCGGCACCACCAGGAATAACTggtctaacaatttatttagcAGGTGCTCAAGGACAAGTTGTTGGAGGTGCTGTAGTTGGTGCTTTGATTGCGTCAGGACCTGTTGTGATCATGGCTGCATCATTCATGCACGCTACTTTCGATCGTCTGCCACTCGAAGACGATGAACTTGCTGCTGCTATGCAGAATCAGCATTACCAAAATGGACGTGGGCAACATCATCTTGATATCGCTGACTTATATGCAATGCCACAGAACCTACTCATGAATGGTGCAATGCCTCCCGAGATATACTCTTGGGCACCAGGGAGAAACTTGTCAAAAACCTGA 780 0.4372 MFGEMEHKQEQDNGNQNNNNNMSGNGIDVTLISPKVPKSVSPVSSAAEGETLKRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILNGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDDELAAAMQNQHYQNGRGQHHLDIADLYAMPQNLLMNGAMPPEIYSWAPGRNLSKT 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03765 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 192 IPR005175 -
Tsu05g03765 259 MobiDBLite consensus disorder prediction 12 28 - -
Tsu05g03765 259 ProSiteProfiles PPC domain profile profile. 77 215 IPR005175 -
Tsu05g03765 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 15 258 - -
Tsu05g03765 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 258 IPR014476 GO:0003680
Tsu05g03765 259 MobiDBLite consensus disorder prediction 1 71 - -
Tsu05g03765 259 PIRSF ESCAROLA 2 253 IPR014476 GO:0003680
Tsu05g03765 259 Gene3D - 79 224 - -
Tsu05g03765 259 CDD DUF296 83 163 IPR005175 -
Tsu05g03765 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03765 Tsu-Chr5 48961093 48961872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03765 5 258 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 67.188 1.12e-104 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03765 - - gmx:100804941 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03765 05 48961093 48961872 Tsu05g03765 05 48961093 48961872 ECH