Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03762 ATGCACAATGCAGGAGGCTCTCTTCACCCTTTCTCCAGCAATGGAGAAACACATTCATCAAGTAGACCATTACTGATCAAGGAACAATCATTCCATGATCTTGCTCCTTCACCATCACTTCTTCAATCTACTTCTTCTTGTATCATCAATGAAGCGAAAAACCCTTCTTTTATTAACCTCATAGCCAACTTGAGCATCACGAATGCAAAGATTACTCATCGCTCCTGCTCTGCTCCGTCAGTATTATTCACCAACATGAGAGTAGATTTTCATGAGCCATCTGATCATAGACCTGCTTATAGGCCACCAACTTTAATAGTTAGACTATCTTtcattattcttttcttttatgtgGCTATTGGTGTTACATTTTACATGATAAGTGGGAGTTTCAAAGGCACTACCACATTCAGACCAGTAGATGCTGTGTACTTCACAGTGGTAACTTTATGCACTATTGGATATGGAGATATTGTTCCTGATACCATATTTGCAAAAATGTTTACATGTGGTTTAATTTTGgtgggttttggattttttggttttatgcTTAATGGATTAGTTGTATACATCTGTGATACACATGAGGCATTCTTATTGAGCATGATGGATGAGGATAGATACAAGAAAATTCTAAGGACTTGTATGGTTGATGAAGAGAAAGGAAGAATGAGAATAAGAACCAAAGTTTGTGTTGCTTCGGTTGTTGTCATTGTCTGTATTGCTATTGGAACAATCACAGCACACTTTGTCGAGGATCTAAATTGGGCCGACAGTTTTTATCTCTCCGTTACTTCTGTTACAACGGTTGGTTATGGGGACTATgctttcaaaactttaattgGAAGATGTTTTGCGATTCCGTGGCTTTTGGTAAGCACATTCGCAGTTACAAGGTCGTTTCTATACCTCACTGATTACAGCTTGCAAAAGAGAAGCCGCGAGATGACAAAATGGATTCTTCAGAAGAAAATAACCTTAACAGATTTAGCGGCTGCAGATCTTGATCATGATGGATCAATCAGTAAATCTGACTTTGTCATATACAAGCTTAAGCAAATGGGGAAAATTACTGAGATAGACATTCTACAAATTAGCAAGCAATTTGATTCATTGGACCATGCCATGTATGGCAAGATCACTCTAGCTGACCTCATGGAAACTGTCTAA 1170 0.3641 MHNAGGSLHPFSSNGETHSSSRPLLIKEQSFHDLAPSPSLLQSTSSCIINEAKNPSFINLIANLSITNAKITHRSCSAPSVLFTNMRVDFHEPSDHRPAYRPPTLIVRLSFIILFFYVAIGVTFYMISGSFKGTTTFRPVDAVYFTVVTLCTIGYGDIVPDTIFAKMFTCGLILVGFGFFGFMLNGLVVYICDTHEAFLLSMMDEDRYKKILRTCMVDEEKGRMRIRTKVCVASVVVIVCIAIGTITAHFVEDLNWADSFYLSVTSVTTVGYGDYAFKTLIGRCFAIPWLLVSTFAVTRSFLYLTDYSLQKRSREMTKWILQKKITLTDLAAADLDHDGSISKSDFVIYKLKQMGKITEIDILQISKQFDSLDHAMYGKITLADLMETV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03762 389 ProSitePatterns EF-hand calcium-binding domain. 334 346 IPR018247 -
Tsu05g03762 389 Gene3D - 192 333 - -
Tsu05g03762 389 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 52 384 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tsu05g03762 389 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g03762 389 PANTHER OS01G0696100 PROTEIN 52 384 - -
Tsu05g03762 389 Gene3D - 101 191 - -
Tsu05g03762 389 SUPERFAMILY Voltage-gated potassium channels 207 325 - -
Tsu05g03762 389 Pfam Ion channel 112 188 IPR013099 -
Tsu05g03762 389 Pfam Ion channel 236 305 IPR013099 -
Tsu05g03762 389 PRINTS Two pore domain K+ channel signature 148 176 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tsu05g03762 389 PRINTS Two pore domain K+ channel signature 268 277 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tsu05g03762 389 SUPERFAMILY Voltage-gated potassium channels 100 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03762 Tsu-Chr5 48943963 48945697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03762 73 387 Ion Channels AT4G18160 47.468 3.39e-99 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03762 K05389 - gmx:100789639 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03762 05 48943963 48945697 Tsu05g03762 05 48943963 48945697 ECH