Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03754 ATGCAAAGGGTCAGTGGAATAAGTGGCAGCGAGTTTATTCTCCAAAGCATTAAGCTCGGAGACAAGAGTCAAGAGCATCGAAGCTCCAATCAGaaaacgGATACACTCTTTCAGAAACAACACTTGTTGCTTCAGACAAAGGCTAGATGGGTGGAGATAGCGAAAATGAAAGTACAACAACTTCTCTTACAGCCTGTCAAGGATCGTTCCCCATTTCGATTCACATGGAAAGTTGACAGAGTTTCTCAGATGAATACAAAAAAGCTCTATTCAGATGTATTTGAAGTTGGAGGTTATAAATGGCGTGCGCTTATTTTCCCAAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAGCTAGTTTGCCCTACGGTTGGAGTAGATATGCACAGTTTGGCATGACATTGGTTAATCAAATCAAGAAGAAGCACTCACTGAGAAGAGACTCGCAGCACCAATTCAATCCACGACAAAGTGATTGGGGTTTCACGTCCTTCATACCTCTTGGTGAATTGTATGATCCTTCAAGAGGGTATCTTGTGAATGATACTCTTGTAGTTGAAGTTGAAGTTTTAGTAAGATTCAATCCGAATGAGAATGGCACTGCTGAGCATTCAAGGGATACATTGAAGAAAGAGCACagaaaaaagcacaaaaataaagaaatggcAGAGACTCACTTCTACACTATAAAGGTGACACGAGATGAAGACCTTGCGGAACAGATTGGAAAGGATGTATATTTTGATCTTGTAGACCATGAAAAAGTGAGGAGTTTCCGTGTTCAAAAGGATACCTCAATTAACATTTTCAAGGATGATGTTGCTAAAGAGTTTGGTATACCAGCTCGATTCCAGCGCTTTTGGATATGGACAAAGCGTGTAAACGATACATTTCGTTGGAGAATTAGTAAGGTAATGAATGCCTACAAAGCAGAATCCCGTTTGTTTATGCAAGTTGAGCATGGGCCGGATTTATGTCCCATTGCACAACTAAATAAGAGAacggatgatgatgatggtgatgaggacgacgatgatgatgatatattactttttttcaaGTTATATGATCCTGAAAAAGAGGAGCTACGGTGTGGTTCTGTTTACTATACATATCTATCTATGGCAAATTCTGAACAGTCGGATGGTTTCACCTATGATGTTTTCCTCAGTTTTAGAGGGCAAGACACACGGGAAACTATTGTTGGATATCTTCTTGATGCATTTGAGAAGAGGAGAATCAGTGTTTTCTATGATGATAAAAAACTTGAATTAGGGGAAGACATTTCAACTGCCCTTGGTAAAGCCATACAAGAATCTAATATCTCAGTTATTGTTTTTTCTCAGAATTATGCATCTTCTAAGTGGTGCCTTAACGAACTTGCGAAGATCATGGAATGTACGAAAagaaacaataaacaaattGCTTTTCCAATATTTTACCATGTTGATCCATCGGATGTACGACATCAAAGAAAGAGCTATGGAGAAGCCATGGTTGCTCATCAGAATAAGTTTGGAAAAGagtcagaaaaaataaaagcatgGACAGCAGCATTATCTGAAGTGGCAGACTTGAAAGGTCACCACATCCACACTGGATTCGAAATCAATCATGTTAAAGAGATTGCCGATAAGGTCCACGCTAATATAGCACCTAAACCTTTAATTGATGGTGAGAATCCAGTTGGACTAGATCAACGCATAGAAGAGGTGAGGTCACTTCTAGACTTGAAGCCAAATGACGACACTGTATGCATATTAGGCATTATTGGACTTGGCGGAATAGGAAAAACTGAACTTGCCAAAGCATTGTATAACAAGATTGTGCGCCAATTTGAAGCTGTAAGTTTTCTTGCCAATGTTAGAGAGAAATCAAACACAATCAATGGCCTAGAAGGTCTACAGAAAACCCTTTTATCAGAGATGTTTGAGAAACCAGAGACCGAGTTGGGATGCACAAGTAAAGGAATCTCCGAAATAAAACACAAGCTTGGAAGGAAAAAGGTTCTTTTGGTACTTGACGATGTTGATAAGATAAGACAATTAGAAAACTTGGCAGGAGGAAGTAATTGGTTTGGTCCAGGTAGTAGGATCATTATAACTACAAGGGACCAACGTTTACTCATGCGTACTTATCCAGTAGAAGTAATTAAGACTTATGGAATGACTGAACTTAATGAACAACTTTCTCTTGAGTTGTTTTGTAGAAATGCCTTTGGAAAAAGCAATCCTAAAACAGGATATGAGGCTTTGTCTTCTCGCGTGGTTGGTTATGCAAAAGGTCTTCCATTGGCTCTAAAAGTTATAGGCTCCAATTTGCGTactagaaaaagtttaaaagcTTGGGAGGATGCATTGAAAGATTATGAGAGGATTCCACGTAAAGAGATTCAAAAGGTGCTTCAAGTAAGCTATGATGTATTGGAGCCTCATGCACAAAGTGTTTTCCTAGATATAGCTTGCTTCTTCAAAGGGAAAAGCATAAAATATGTTGAAGAAATACTTGAAGAATTCAGTGCAGCATCAAATATTGTAGAGCTTGCTAATAAATCTCTCTTGAATGTTGATAATGGATACTTGAATATGCATGACCTAATACAGGATATGGGTAGAGAGATTGTTAGGAAAGAGGCACCAGATAATCCCGCAAAACGTAGTAGATTATGGCATCATCAAGATGTCATTGATGTATTATCTGCCAATGATTTTggAAGTGATGCAATTCAAGGGTTAATGCTTGTTCCTCCCCAACATATAACAGAAGTAGATTGGAATGATACTGCTTTTGAGAAGATGAAGAGTCTCAGAATTCTCATTGTTCAATATACAGCCTTTTCATCTGAGCCTAAACATCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAAGTAG 2979 0.3578 MQRVSGISGSEFILQSIKLGDKSQEHRSSNQKTDTLFQKQHLLLQTKARWVEIAKMKVQQLLLQPVKDRSPFRFTWKVDRVSQMNTKKLYSDVFEVGGYKWRALIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFGMTLVNQIKKKHSLRRDSQHQFNPRQSDWGFTSFIPLGELYDPSRGYLVNDTLVVEVEVLVRFNPNENGTAEHSRDTLKKEHRKKHKNKEMAETHFYTIKVTRDEDLAEQIGKDVYFDLVDHEKVRSFRVQKDTSINIFKDDVAKEFGIPARFQRFWIWTKRVNDTFRWRISKVMNAYKAESRLFMQVEHGPDLCPIAQLNKRTDDDDGDEDDDDDDILLFFKLYDPEKEELRCGSVYYTYLSMANSEQSDGFTYDVFLSFRGQDTRETIVGYLLDAFEKRRISVFYDDKKLELGEDISTALGKAIQESNISVIVFSQNYASSKWCLNELAKIMECTKRNNKQIAFPIFYHVDPSDVRHQRKSYGEAMVAHQNKFGKESEKIKAWTAALSEVADLKGHHIHTGFEINHVKEIADKVHANIAPKPLIDGENPVGLDQRIEEVRSLLDLKPNDDTVCILGIIGLGGIGKTELAKALYNKIVRQFEAVSFLANVREKSNTINGLEGLQKTLLSEMFEKPETELGCTSKGISEIKHKLGRKKVLLVLDDVDKIRQLENLAGGSNWFGPGSRIIITTRDQRLLMRTYPVEVIKTYGMTELNEQLSLELFCRNAFGKSNPKTGYEALSSRVVGYAKGLPLALKVIGSNLRTRKSLKAWEDALKDYERIPRKEIQKVLQVSYDVLEPHAQSVFLDIACFFKGKSIKYVEEILEEFSAASNIVELANKSLLNVDNGYLNMHDLIQDMGREIVRKEAPDNPAKRSRLWHHQDVIDVLSANDFGSDAIQGLMLVPPQHITEVDWNDTAFEKMKSLRILIVQYTAFSSEPKHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQK 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03754 992 Coils Coil 991 992 - -
Tsu05g03754 992 SUPERFAMILY Toll/Interleukin receptor TIR domain 381 534 IPR035897 -
Tsu05g03754 992 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 291 376 IPR024729 -
Tsu05g03754 992 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 395 958 - -
Tsu05g03754 992 Gene3D - 731 816 IPR042197 -
Tsu05g03754 992 CDD MATH 72 189 IPR002083 GO:0005515
Tsu05g03754 992 Pfam TIR domain 392 537 IPR000157 GO:0007165
Tsu05g03754 992 PRINTS Disease resistance protein signature 593 608 - -
Tsu05g03754 992 PRINTS Disease resistance protein signature 670 684 - -
Tsu05g03754 992 PRINTS Disease resistance protein signature 766 780 - -
Tsu05g03754 992 SUPERFAMILY TRAF domain-like 71 198 - -
Tsu05g03754 992 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 68 218 IPR008974 GO:0005515
Tsu05g03754 992 Gene3D - 386 557 IPR035897 -
Tsu05g03754 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 826 IPR027417 -
Tsu05g03754 992 Pfam NB-ARC domain 573 816 IPR002182 GO:0043531
Tsu05g03754 992 Coils Coil 959 959 - -
Tsu05g03754 992 Pfam MATH domain 79 197 IPR002083 GO:0005515
Tsu05g03754 992 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 395 958 IPR044974 GO:0006952
Tsu05g03754 992 ProSiteProfiles MATH/TRAF domain profile. 71 196 IPR002083 GO:0005515
Tsu05g03754 992 SMART till_3 391 532 IPR000157 GO:0007165
Tsu05g03754 992 ProSiteProfiles TIR domain profile. 390 530 IPR000157 GO:0007165
Tsu05g03754 992 SUPERFAMILY "Winged helix" DNA-binding domain 802 905 IPR036390 -
Tsu05g03754 992 Gene3D - 558 723 IPR027417 -
Tsu05g03754 992 SMART math_3 73 177 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03754 Tsu-Chr5 48827270 48877548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03754 392 945 WRKY Transcription Factor Family AT4G12020 29.391 3.55e-52 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03754 - - mtr:MTR_5g090940 801.586