LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g03726	ATGGTTTTGAaggttttttcattttttattcttcttgtGTTATACTCTTTTGCTGTTGAAGCAATTTCTGAGAATCATAATTATCATAATCACAATAGTCTCAAGAAAAATGGATCTTCACTTGCTGCAATAAAATTTCCTAATCATCCAAGTTTCAATGTTGTCTCATCTTCTGAGGACACTGATTGTAGTTTCTCAAATTCAGACAAATTTGGAACTACAATGAAATCAGGTGAAGAAACTGATGATGAAGGTGAAGAAAGTGAAGCTTTTCTAGCTTCAAATCCACACAAACAATCTGTGAAGTTTGATTTGAAACACATATCAATGAACAATGATTTTGAGCCAAAAAAATCTTTGATTGATTACACAGTAAGAGATTTGACAAGAATTCAAACTCTTCATACAAGGGTCATTGAGAAGAAGaatcaaaacacaatttcaaGGCTACAAAAAGcaacaaagaaacaaacaaattcaaaGCAATCCTACAAGCCAGCAGTTGCTCCTGTTGCGTCTGCGCCGGAATATTCGCCAAGTGGTTATTCAAGTCAACTTGTTGCAACTTTGGAATCAGGAGTAAGTCTTGGCTCTGGTGAGTATTTTATGGATGTGTTTATAGGTACACCACCTAAGCATTATTCTTTAATACTTGATACTGGTAGTGACCTTAATTGGATTCAATGTGTTCCTTGCATTGCTTGTTTTGAACAAAGTGGTCCTTATTATGATCCTAAAGAATCTAGTTCTTTTGAGAATATAACATGTAATGATCCTAGGTGTAAACTAGTTTCATCACCAGATCCACCTAAGCCATGTAAAGATGAGAATCAAACATGTCCTTACTTTTATTGGTATGGTGATAGTTCTAATACAACAGGTGATTTTGCATTGGAAACTTTTACTGTTAATCTTACAACTCCTAATGGAAAATCAGAACAAAAACATGTTGAAAATGTTATGTTTGGTTGTGGTCATTGGAATAGAGGACTATTTCACGGTGCGGCCGGTTTGTTAGGATTAGGAAGAGGACCATTATCATTTGCTTCTCAACTTCAATCTTATTATGGTCATTCATTTTCATATTGTCTTGTGGATAGAAATAGTAATTCAAGTGTTAGTAGCAAGTTGATTTTCGGCGAAGATAAAGAGCTTCTTAGCCATCCTAATTTGAATTTCACTTCTTTTGTTGGCGGCGAAGAGAATTCGGTTGATACATTTTACTATGTCGGGATAAAATCTATTATGGTTGATGGTGAAGTGTTGAAGATACCAGAAGAAACTTGGCATTTATCAGAAGAAGGTTCTGGTGGTACAATAATTGATTCTGGTACAACTTTAACTTATTTTGCTGAACCTGCTTATGAGATTATTAAAGAAGCTTTTATGAAAAAGATTAAGGGATATGAAATTGTTGAAGGTTTTCCACCTCTTAAGCCATGTTATAATGTGTCAGGAATTGAAAAAATGGAGTTACCTGATTTTGGAATTTTGTTTTCTGATGGAGCAATGTGGGATTTTCCAGTAGAGAATTACTTTATACAGATTGAACCTGATGTTGTTTGTTTGGCTATTTTGGGAACTCCTAAGTCTGCACTTTCAATTATTGGAAATTATCAGCAGCAAAATTTTCATATACTTTATGATATGAAGAAATCTAGACTTGGTTATGCACCAATGAAGTGTGCTgatGTATATATCAACGcttccttcttcttcattcCCTCTTTACAAAACAACACAACAAAATCGGCGGTGGTGCTGTTCATCGTAAAAATGGTTGGCTTCAAgTTTCACCAGTATCAAATTGTTGGAAGAGCTCTTCCTACTGAAAAAGATGAACATCCGAAGATTTATCGGATGAAACTTTGGGCAACCAATGAAGTTCGTGCTAAATCTAAGTACTGGTATTTCTTGAGGAAGATTAAGAAGGTTAAGAAAAGCAATGGACAAGTTTTGGCTATCAATGAGATCTTCGAGAAAAACCCCACCAAGATTAAGAACTTTGGAATTTGGTTGAGATACCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGTGACACTACTCTTAACGGTGCTGTGGAGACAATGTACAACGAAATGGCATCTCGTCACAGGGTCAGGTTTCCATGCATCCAAATCATTAAGACCGCCACCATACCAGCCAATCTTTGCAAAAGGGAGAGCACTAAGCAGTTCCataattccaaaatcaagttcCCCTTGGTGTTCAAGAAGATTAGGCCACCAACTAGGAGCCTAAAAACAACATACAAAGCAAACAAGCCCAACCTGTTTATGTGA	2313	0.3454	MVLKVFSFFILLVLYSFAVEAISENHNYHNHNSLKKNGSSLAAIKFPNHPSFNVVSSSEDTDCSFSNSDKFGTTMKSGEETDDEGEESEAFLASNPHKQSVKFDLKHISMNNDFEPKKSLIDYTVRDLTRIQTLHTRVIEKKNQNTISRLQKATKKQTNSKQSYKPAVAPVASAPEYSPSGYSSQLVATLESGVSLGSGEYFMDVFIGTPPKHYSLILDTGSDLNWIQCVPCIACFEQSGPYYDPKESSSFENITCNDPRCKLVSSPDPPKPCKDENQTCPYFYWYGDSSNTTGDFALETFTVNLTTPNGKSEQKHVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSYYGHSFSYCLVDRNSNSSVSSKLIFGEDKELLSHPNLNFTSFVGGEENSVDTFYYVGIKSIMVDGEVLKIPEETWHLSEEGSGGTIIDSGTTLTYFAEPAYEIIKEAFMKKIKGYEIVEGFPPLKPCYNVSGIEKMELPDFGILFSDGAMWDFPVENYFIQIEPDVVCLAILGTPKSALSIIGNYQQQNFHILYDMKKSRLGYAPMKCADVYINASFFFIPSLQNNTTKSAVVLFIVKMVGFKFHQYQIVGRALPTEKDEHPKIYRMKLWATNEVRAKSKYWYFLRKIKKVKKSNGQVLAINEIFEKNPTKIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCIQIIKTATIPANLCKRESTKQFHNSKIKFPLVFKKIRPPTRSLKTTYKANKPNLFM	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g03726	770	Gene3D	Acid Proteases	382	569	IPR021109	-
	Tsu05g03726	770	CDD	pepsin_A_like_plant	200	562	IPR034161	-
	Tsu05g03726	770	Pfam	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A	599	720	IPR023573	GO:0003735\|GO:0005840\|GO:0006412
	Tsu05g03726	770	Hamap	50S ribosomal protein L18Ae [rpl18a].	598	661	IPR028877	-
	Tsu05g03726	770	Gene3D	Acid Proteases	179	381	IPR021109	-
	Tsu05g03726	770	MobiDBLite	consensus disorder prediction	57	74	-	-
	Tsu05g03726	770	Pfam	Xylanase inhibitor N-terminal	201	380	IPR032861	-
	Tsu05g03726	770	Gene3D	-	664	739	-	-
	Tsu05g03726	770	PRINTS	Pepsin (A1) aspartic protease family signature	439	450	IPR001461	GO:0004190\|GO:0006508
	Tsu05g03726	770	PRINTS	Pepsin (A1) aspartic protease family signature	207	227	IPR001461	GO:0004190\|GO:0006508
	Tsu05g03726	770	PRINTS	Pepsin (A1) aspartic protease family signature	534	549	IPR001461	GO:0004190\|GO:0006508
	Tsu05g03726	770	Pfam	Xylanase inhibitor C-terminal	408	558	IPR032799	-
	Tsu05g03726	770	ProSiteProfiles	Peptidase family A1 domain profile.	201	558	IPR033121	-
	Tsu05g03726	770	SUPERFAMILY	Acid proteases	193	563	IPR021109	-
	Tsu05g03726	770	MobiDBLite	consensus disorder prediction	57	87	-	-
	Tsu05g03726	770	PANTHER	ASPARTYL PROTEASES	9	564	IPR001461	GO:0004190\|GO:0006508
	Tsu05g03726	770	Gene3D	-	589	663	-	-
	Tsu05g03726	770	PANTHER	ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE	9	564	-	-
	Tsu05g03726	770	SUPERFAMILY	RplX-like	663	738	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g03726	Tsu-Chr5	48568329	48574598	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g03726	584	770	Cytoplasmic Ribosomal Protein Gene Family	AT2G34480	86.631	2.53e-116	348

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g03726	K22683		-	zju:107416111	1116.29

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu05g03726	05	48568329	48574598	Tsu05g03726	05	48568329	48574598	ECH
	Tsu03g01454	03	14201991	14214533	Tsu05g03726	05	48568329	48574598	PCT