Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03718 ATGGATATTGTGACCAAATTAGATAACTTTGATGAcaagaaagaagatgaagttgtgCTTCCTGGATTTAGATTTCATCCAACAGATGATGAGCTTGTCGGATTTTATCTACGGCGAAAAGTGGATAAAAAGCCTCTTCGAATTGAACTCATCAAACAAATTGATATTTACAAATATGATCCATGGGATTTACCAACTAGTACTATGGGAGAGAAAGAATGTTATTTCTTTTGTCTAAGAGGAAGAAAATACAGAAACAGCATAAGGCCTAATAGAGTAACAGGATCTGGATTTTGGAAAGCCACTGGAATTGATAAGCCTATATACTCATCAAGTGTTAAAGAATCATCATCAAATGAATGTATTGGACTTAAGAAATCCTTGGTTTACTATCGTGGAAGTGCTGGAAAAGGTACTAAAACTGATTGGATGATGCATGAATTTCGTCTTCCACCTAAAGGAAAAACTAGCAATAATAGCAATGATGTTCAAGAAGCTGAAGTGTGGACACTATGCAGAATATTCAAAAGAATCCCATCATACAAAAAATACACaccaaatttgaaaaaagacTCAGAAGAAACAGTAGCATTCACAACTAACTCTTCAAGTTCCAAAACATGCAGCTTAGAATCTGATAACACCAAACCATACTTGACTTTCACAAACTCACCACTTGTTGATGAAACCAAACCATTTATTAATGCACATGTTGACCAAAGGATTAACCCCTCATTTCTAAGTCATCAGTTAGGCAATGTAACTCATCAGACTCCAACAACATTGTCTCAGTCAAGTTTTTGGAATGATCAGAATGTTGTTGATGAAACATTTGCAAATGAGAATTGGGATGATCTTAGATCTATTGTTCAGTTCGCCTTTGATCCTTCAAAGGTTTATGATTGTAAAGACTTTAATGATTTAATTTAA 930 0.3301 MDIVTKLDNFDDKKEDEVVLPGFRFHPTDDELVGFYLRRKVDKKPLRIELIKQIDIYKYDPWDLPTSTMGEKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSSSVKESSSNECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPKGKTSNNSNDVQEAEVWTLCRIFKRIPSYKKYTPNLKKDSEETVAFTTNSSSSKTCSLESDNTKPYLTFTNSPLVDETKPFINAHVDQRINPSFLSHQLGNVTHQTPTTLSQSSFWNDQNVVDETFANENWDDLRSIVQFAFDPSKVYDCKDFNDLI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03718 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 303 - -
Tsu05g03718 309 PANTHER - 7 303 - -
Tsu05g03718 309 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
Tsu05g03718 309 ProSiteProfiles NAC domain profile. 19 177 IPR003441 GO:0003677|GO:0006355
Tsu05g03718 309 Gene3D NAC domain 28 180 IPR036093 GO:0003677|GO:0006355
Tsu05g03718 309 SUPERFAMILY NAC domain 17 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03718 Tsu-Chr5 48502852 48506428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03718 13 177 NAC Transcription Factor Family AT5G39820 59.563 1.60e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu05g03718 NAM 1.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03718 - - gmx:100784323 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03718 05 48502852 48506428 Tsu05g03718 05 48502852 48506428 ECH