Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03715 ATGGCAAATTTTGAACAACGGTCGGATGGTTTCACCCATGATGTTTTCCTCAGTTTTAGAGGAGAAGACACACGGCACGGTATTGTTGGATATCTTCTTGATGCATTTGAGAAGAGGGGAATCAATGTTTTCTATGATGATAAAAAACTTGAATTAGGGGAAGACATTTCAACTTCCCTTGGTAAAGCCATACAAGAATCTAATATCTCAGTTATTGTTTTTTCTGAGAATTATGCATCTTCTAGGTGGTGTCTCGATGAACTTGCGAAGATCATGGAATGTACGAAAagaaacaataaacaaattGCTTTTCCAATATTTTACCATGTTGATCCATCTGATGTACGACATCAAAGAAAGAGCTATGGAGAAGCCATGGTTGCTCATCAGAAGAGGTTTGAAAAAAACTCAGACAAATTAAAAGCATGGACAGCGGCATTGTCTGAAGTGGCAGACTTTAAAGGTCACCATATCGACACGGGGTTTGAAATTGATCATATTAAAGAGATTGTTGATAAGGTCCATGCTAAAGTTACACCTAAACCTCTTCTTTCAGGTGACGATCCAGTTGGACTTGATCACCACACAGAAAATGTGAAGTCACTTGTAGATGATACTGATCATAGTGTATGCATGTTGGGCATATATGGACTTGGTGGAATAGGGAAAACTGAACTTGCCAAAGCATTGTATAACAAGATTGTGCACCAATTTGAAGCCGCAAGTTTTCTTGCCAATGTTAGAGAGAAATCGAACAAAATCAATGGCCTAGAAGAGCTACAGAAGACCCTTTTATCAGAGATGTTTGAGCAGCCAGAAACTGAGTTGGGAAGTACAAGTAAAGGAATCTATGAAATAAAACACAAGCTTGGAAAGAAAAAGGTTCTTTTGGTTCTTGACGATGTTGATGAGATGGTACAATTAGAAAATTTGGCAGGAGGAAGTGATTGGTTTGGTCCAGGTAGTAGGATCATTATAACTACAAGGGACAAAGGTTTGCTCATGGGAACTCATCCAATAGAAGTTCAAAAGATTTATGAAATGACTGAACTTAATTATCAGCACTCTCTTGAGTTGTTTTGTCGGAATGCCTTTGGAGAGAACCAACCTGAAAGAGGCTATGAAGCCGTTTCTTCTCGTGCGGTTGGCTATGCTAAGGGTGTTCCATTGGCTTTAAAAGTAATAGGTTCCAATTTGGCTACTAGAAAGAGTATAAGAGCTTGGGAACATGCATTAAAAGATTACGAGAGGACCCCACGTAAAAGGATTCAAGACGTGCTCAAAATAAGCTACGATGTGTTGGAGCCCTATGCCCAAACTGTTTTCTTAGATATTGCTTGCTTCTTCAAAGGGGAGAGAATAGAGTATGTTGAAGAGATACTTGAAGAATTCAGCGCAGCATCTAATATTGAAGAACTTGTTAATAAATCTCTCTTGATTGTTGAACATGGCTGTTTGGATATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTCAGGCAAGAGGCACCAAATCCCGCCGGCCGTAGTAGATTATGGTTTCATCAAGATGTTATTGATGTATTATCAGATGAAAATTTTGGAAGTGGTGTGATTCAAGGGATAATGCTTGATCCTCCACAACATATAGAACAAGAAGATTGGAGTGATACTGCCTTTGAGAAGATGAATCACCTGAGAATTCTCATTGTACGAAATGCAACATTTTCATCAGAGCCTAAACATCTTCCAAATCATTTAAGGCTGCTTGATTGGGTTGGGTACCCTTCAAAGTCTTTCCCAACAAAATTTTATCCAAGAAATATCATAATATTAAACTTGCCTAATAGTCAGCTTACAATGGTCGATCCATTTAAGAACTTGGACACTTCCCAGATATAG 1884 0.3832 MANFEQRSDGFTHDVFLSFRGEDTRHGIVGYLLDAFEKRGINVFYDDKKLELGEDISTSLGKAIQESNISVIVFSENYASSRWCLDELAKIMECTKRNNKQIAFPIFYHVDPSDVRHQRKSYGEAMVAHQKRFEKNSDKLKAWTAALSEVADFKGHHIDTGFEIDHIKEIVDKVHAKVTPKPLLSGDDPVGLDHHTENVKSLVDDTDHSVCMLGIYGLGGIGKTELAKALYNKIVHQFEAASFLANVREKSNKINGLEELQKTLLSEMFEQPETELGSTSKGIYEIKHKLGKKKVLLVLDDVDEMVQLENLAGGSDWFGPGSRIIITTRDKGLLMGTHPIEVQKIYEMTELNYQHSLELFCRNAFGENQPERGYEAVSSRAVGYAKGVPLALKVIGSNLATRKSIRAWEHALKDYERTPRKRIQDVLKISYDVLEPYAQTVFLDIACFFKGERIEYVEEILEEFSAASNIEELVNKSLLIVEHGCLDMHDLIQDMGREIVRQEAPNPAGRSRLWFHQDVIDVLSDENFGSGVIQGIMLDPPQHIEQEDWSDTAFEKMNHLRILIVRNATFSSEPKHLPNHLRLLDWVGYPSKSFPTKFYPRNIIILNLPNSQLTMVDPFKNLDTSQI 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03715 627 Gene3D - 181 340 IPR027417 -
Tsu05g03715 627 PRINTS Disease resistance protein signature 289 303 - -
Tsu05g03715 627 PRINTS Disease resistance protein signature 212 227 - -
Tsu05g03715 627 PRINTS Disease resistance protein signature 385 399 - -
Tsu05g03715 627 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 620 IPR044974 GO:0006952
Tsu05g03715 627 SUPERFAMILY L domain-like 547 619 - -
Tsu05g03715 627 ProSiteProfiles TIR domain profile. 11 182 IPR000157 GO:0007165
Tsu05g03715 627 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 8 620 - -
Tsu05g03715 627 SUPERFAMILY "Winged helix" DNA-binding domain 422 523 IPR036390 -
Tsu05g03715 627 SMART till_3 12 153 IPR000157 GO:0007165
Tsu05g03715 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 445 IPR027417 -
Tsu05g03715 627 Pfam TIR domain 13 174 IPR000157 GO:0007165
Tsu05g03715 627 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 155 IPR035897 -
Tsu05g03715 627 Gene3D - 7 180 IPR035897 -
Tsu05g03715 627 Pfam NB-ARC domain 198 435 IPR002182 GO:0043531
Tsu05g03715 627 Gene3D - 350 435 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03715 Tsu-Chr5 48428735 48481746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03715 13 611 WRKY Transcription Factor Family AT4G12020 30.244 3.57e-63 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03715 - - mtr:MTR_5g090940 922.924