Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03712 ATGGATGCAACCTCAGAGATCTTTGAACAACCTGACTCTGACGTCCGAAATATCCCTGTTTTAGAGTTTAATGGTGCAAACTTGGACAATCTTGCAGAAAAAGTGAGCAATAATATTAGTGAGgGCACTGAAGTTGAAAATAATGAAGAAATAATTTCAAAGGATGTTGCACAAGATCCAAAGGTCATTAAGGTTGAAAATAATGAAGAAATAACTGTAGAGGATGTTGcacaacaaaattcaaatgtcattGAGCATCCTAAAAAAATTCCTCAGATTGGGTTGGAATTTGACTCTCTTGAAGATGTTAAGAATTTCTACAAAGCATTTGCAAAAGAAGAAGGTTTCGGGGTTCGTACACGTTCCAGTAAACCAAACTTATGTATACTTGTGTGTTCTAATGCTGGTCAGCGTACAACCAACAATACCAAGAATGAGGAAAGTAATCCACTTAAAAGAAAATCTAGGAGAAGGTGCTCTAGTTCAAGAACTAATTGTATGGCATCACTTACTGCTTCAAAGGCACGAAAGAGACACAGGTGGGCTATCATTGGCTTTAACAATGTCCATAATCATGGTATGGTTAGCCCAAAGAGTGTGCCCTATCTTAGATGTCATAAGAAAATGAGTGCAGCAGCAAAAAGCCTTGTGGAAACGTTTGATAAAGAGGGTTTGCCTACCGGAAAAGTTGCTGCAATGTTTAACAGTGCAGGTTCAACCTTCTCTAATAGAGATTGTTGGAACCATCTTAGAGATCTTCGATCTAGGAATTTAGATGTGGGAGATGCCCAAGCCGTGTTCAACTTTTGCATACAAAAGCAAACTGAGAATCCAAATTTCTTTTATGCAATACAGTGTGATAATGATTCACGAATGATTAACTTTTTTTGGGTAGACGCAAGATCAAGGCTAGCCTATGAAATATTTGGAGATGTTGTTACATTTGATACAACATACAAGACCAACAAGTATAGTATGCCATTTGCACCTTTTACCGGgttgaatcatcatcatcagtcTATTTTATTTGGATGTGCTTTATTGCAAGATGAAACAGAGAAGTCATTTACATGGTTGTTTGAAAATTGGCTTAAAGCAATGGGCGGAAAGAGTCCTGTATCAATAATTACTGATCAAGATTTGGCAATGAAAGTCGCAATATCCAAGGTATTTCCACAAACTCGGCATCGGTTATGTTTATGGCACATTAGGAAGAAATTTCCTGAGAAGCTTTCATACATTTACCATAAAAACTCAACTTTTAAGCGTGATTTAAAAAGGTGTATACGTGAGTCATCATGTATAAAAGACTTTGAAGAAGACTGGAATCGTATAGTGGTTGAGTATGATTTGGTGAAAAACGAATGGCTTCAGGGTTTATACAATATAAGAGAATCATGGATTCCAGTTTATAATAGAAATACTTTTTTTGCTGGAATGAATACTACACAGAGGAGCGAGAGCATCAATGCTTTTTTTGATTCTTTTGTAGATTCTTCAACCACATTGCAAGATTTTGTCGTGAAATTTGACAAAGCTGTCAATAGTCGctatgagaaagaaaaaaaagaagattttgAATCGAGACATCGAGAACGGATGTTAAGtgttggatcaaaaattgaagAGCATGCTGCAACTTTGTATACTAGAGCCATCTTTAATAAATTTCAAGATGAACTAGCAAAGCTTTGTCGGTTCACAAAGGAGAAAGTTGAGAAAAGTGGGTCTCAATATACATATAAGGTATCCAATGCTTATGTTTCTCAAGACTCATTCATTGTAAGTGTGGATCTAGATACAAGGGATGCAAAATGTGGTTGTCAACTTTTTGAATTTATGGGGATATTATGTAGGCACATCTTGGCAATATTTcaagcaaaaaatattattgaaattcCAAGCAAGTATATTTTACATCGTTGGACAAAGGATGCTAATACGAGCTTAGGATTTAGTGTTCGTGAAACAAATTCGGTATGTGATAATGGTAATTCAGCAACCTTGCGAAGTATGCACATGCATAATCAAGTAAGCAGGTTTCCTGATCTTGCTGCAAAATCAGAGAGAGTTTACAATTTTATATCATCAGGGTTGGAAAAATTATATGAAGAGGCAATAAAGATGAACTCTGAAATGCAAACTAGTAAGGATGGACTTCTTTCTGAGACAAGTTGTCCGGATATGTTAATCCCAGAGCAAGCAAACAAAGAGGCTGAATTAACTATTAGAGATCCGGTAAAATCACAAACCAAAGGAAGACAAAAGGATGATGCCAAACTTCCCAAATCTGGAAGAATCAAAAGTAGTTTAGAGTTGTCAATGAATCGACTCCAAGGAAACAAACGCACTTGTCAAATATGTAGCGAACCTGGTCATAATCGAAGAAGTTGCAAGTTGAAAACAAGCTAG 2412 0.3487 MDATSEIFEQPDSDVRNIPVLEFNGANLDNLAEKVSNNISEGTEVENNEEIISKDVAQDPKVIKVENNEEITVEDVAQQNSNVIEHPKKIPQIGLEFDSLEDVKNFYKAFAKEEGFGVRTRSSKPNLCILVCSNAGQRTTNNTKNEESNPLKRKSRRRCSSSRTNCMASLTASKARKRHRWAIIGFNNVHNHGMVSPKSVPYLRCHKKMSAAAKSLVETFDKEGLPTGKVAAMFNSAGSTFSNRDCWNHLRDLRSRNLDVGDAQAVFNFCIQKQTENPNFFYAIQCDNDSRMINFFWVDARSRLAYEIFGDVVTFDTTYKTNKYSMPFAPFTGLNHHHQSILFGCALLQDETEKSFTWLFENWLKAMGGKSPVSIITDQDLAMKVAISKVFPQTRHRLCLWHIRKKFPEKLSYIYHKNSTFKRDLKRCIRESSCIKDFEEDWNRIVVEYDLVKNEWLQGLYNIRESWIPVYNRNTFFAGMNTTQRSESINAFFDSFVDSSTTLQDFVVKFDKAVNSRYEKEKKEDFESRHRERMLSVGSKIEEHAATLYTRAIFNKFQDELAKLCRFTKEKVEKSGSQYTYKVSNAYVSQDSFIVSVDLDTRDAKCGCQLFEFMGILCRHILAIFQAKNIIEIPSKYILHRWTKDANTSLGFSVRETNSVCDNGNSATLRSMHMHNQVSRFPDLAAKSERVYNFISSGLEKLYEEAIKMNSEMQTSKDGLLSETSCPDMLIPEQANKEAELTIRDPVKSQTKGRQKDDAKLPKSGRIKSSLELSMNRLQGNKRTCQICSEPGHNRRSCKLKTS 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03712 803 Pfam SWIM zinc finger 595 629 IPR007527 GO:0008270
Tsu05g03712 803 MobiDBLite consensus disorder prediction 744 765 - -
Tsu05g03712 803 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 91 716 IPR031052 GO:0006355
Tsu05g03712 803 Pfam FAR1 DNA-binding domain 105 195 IPR004330 -
Tsu05g03712 803 SMART 26again6 604 631 IPR006564 GO:0008270
Tsu05g03712 803 MobiDBLite consensus disorder prediction 138 163 - -
Tsu05g03712 803 ProSiteProfiles Zinc finger SWIM-type profile. 593 629 IPR007527 GO:0008270
Tsu05g03712 803 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 91 716 - -
Tsu05g03712 803 MobiDBLite consensus disorder prediction 744 768 - -
Tsu05g03712 803 Pfam MULE transposase domain 312 406 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03712 Tsu-Chr5 48397543 48400398 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu05g03712 MULE 1.7e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03712 - - qlo:115970754 865.529