Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03711 ATGCTCCATAGGTTCGGATTCGGGGAGAAATGGATAGGTTGGATACGTGCTTGTGTTTTTGCCAGAAATTTGTCCGTCCTTGTCAATGGATCTCCGACTCCGAAAATTAGCATCCAAAGGGGTCTTAAACAAGGGGACCCGTTGGCaccttttctctttctcttggTGGTTGAAGGCTTTAGTGGGGTGATGAGGAATGCGGTTGATTTGAATATGTTTAAAGGGTGTAGTATTGGAAGAGTCCCGAAGGTTATTTCTCATCTCCAATATGCGGATGATACGGTGTGTATTTGTGAACCCACGGTGGAAAACCTTTGGTCTATTAAGGCGATCCTTAGAGGGTTTGAAATGGCGTCCGGTTTAAAGGTGAACTTTTGGAAGAGTGGTTTAATGGGAATAAACGTCTCCCCCACGTTTATGAGCATGGCTAGCACGTTCCTTAATTGTAGAGTTGGTTCGGTTCCGTTTATTTATCTCGGTCTTCCAATCGGGGCAAATCCAAAAAGTTTGGTCACATGGGAGCCTATGTTGGATCATCTCCGAAAACGCCTTTTTTCTTGGAGGAATAAATTTTTAAGCTTCGGAGGAAGGATTGTGTTGATTAATTCGGTTTTAAATTCCATCCCGATTTTTTACCTATCTTTTTGGAAGATGCCCACCGGTGTTGTTAAAAAGGTGGTGAGAATCCAAAGAGAATTTCTTTGGCGTGGTGGGAAGAAAATTAGTTGGGTAAAGTGGTCGGTGGTGTGTAAGGAGAAAAGCCAAGGAGGGCTTAGAGTGAGAGATGTTAGAGTGGTTAATCTTAGTCTCTTGGCGAAATGGCGGTGGTGCATTCTCCAACCCGGGAGATCTTTGTGGAAGGATGTTTTGGTGGCGAAATATGGTGATTACATTGTGAACCATGCGAATTGGAGTGGCCATAGAGTACCTTCTTGCTCCTCAAATTGGTGGAAGGATATTAGCGGTCTTGAGAAAGTGGTGGAGGATAGAAATTGGATTCTTGAGTCTATGACAAGGAAGGTGGGTAATGGTAGCTCTACTAGTTTTTGGaattcggtttggattggtgggGAGTCGCTCTCGAGCCGTTTTCCTCGTTTGTTCTCTATCGCTCTTGACAAGGATAGTGTAGTAAGTTATATGGGTACTAGAACCGGAGGGACGTGGGTTTGGAAGGTATTGTGGAGAAGGGACCTTTTTATTCGGGAGGAACCTTTGGTCAACCAATTTTATACCTTGTTGGAGTCGGCTACGGTCACTACGGAGGATGACTCTTGGTGTTGGGCTCCAAACCCGGAAGGTGGCTTTTCGGTAAAATCCACTTATGActttatttttaaggttttgtGCGTAGAGAATGAACTACCACAAGAGAAGGCAGCGGTGTTTAATAATATTTGGGAAAGCCTGGCCCCGTCAAAAGTAATCGCGTTCACTTGGCAATTGCTTTTTGATAGAATTCCAACTAGGACGAATCTTGAGTATCGTCATATTCTTGCCCCGGAGGAGTCGCGGGATTGTGTGGGGTGTGTGGGGGTTGTGGAATCAGCATTACATCTCTTTTTACGGTGTCCGATTGCGGTGTCGGTGTGGTATGAGATTTTTAGGTGGATCGGTGTGGACTCTTTTTACAATAACTTGACCGAGGAAGAACGAGCAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGGAATTGCTTCGTGTTATGGATAAGCTGAAGCACGGTGAAGCTGTAGATCTTCCAAAGTATGATTTTAAGAGTTACAAAAGTGATGCGTTAAGAATGGTGAACCCTTCTAGAaatatagtttaa 1830 0.4268 MLHRFGFGEKWIGWIRACVFARNLSVLVNGSPTPKISIQRGLKQGDPLAPFLFLLVVEGFSGVMRNAVDLNMFKGCSIGRVPKVISHLQYADDTVCICEPTVENLWSIKAILRGFEMASGLKVNFWKSGLMGINVSPTFMSMASTFLNCRVGSVPFIYLGLPIGANPKSLVTWEPMLDHLRKRLFSWRNKFLSFGGRIVLINSVLNSIPIFYLSFWKMPTGVVKKVVRIQREFLWRGGKKISWVKWSVVCKEKSQGGLRVRDVRVVNLSLLAKWRWCILQPGRSLWKDVLVAKYGDYIVNHANWSGHRVPSCSSNWWKDISGLEKVVEDRNWILESMTRKVGNGSSTSFWNSVWIGGESLSSRFPRLFSIALDKDSVVSYMGTRTGGTWVWKVLWRRDLFIREEPLVNQFYTLLESATVTTEDDSWCWAPNPEGGFSVKSTYDFIFKVLCVENELPQEKAAVFNNIWESLAPSKVIAFTWQLLFDRIPTRTNLEYRHILAPEESRDCVGCVGVVESALHLFLRCPIAVSVWYEIFRWIGVDSFYNNLTEEERARVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDLPKYDFKSYKSDALRMVNPSRNIV 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03711 609 Pfam zinc-binding in reverse transcriptase 436 531 IPR026960 -
Tsu05g03711 609 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 163 IPR000477 -
Tsu05g03711 609 PANTHER OS01G0885550 PROTEIN 3 538 - -
Tsu05g03711 609 SUPERFAMILY DNA/RNA polymerases 2 150 IPR043502 -
Tsu05g03711 609 Pfam Phosphoribulokinase / Uridine kinase family 533 598 IPR006083 GO:0005524|GO:0016301
Tsu05g03711 609 Gene3D - 529 609 IPR027417 -
Tsu05g03711 609 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 2 163 IPR000477 -
Tsu05g03711 609 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 3 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03711 Tsu-Chr5 48387096 48393257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03711 537 609 PRT Gene Family AT4G26510 65.753 3.52e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03711 - - lang:109329191 474.167