Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03707 ATGAGCATGGTAAACGCAATTCGCCATCTTCGTGGAGGATATTCCGAGTTTAGTGCTATTAtctttaatattaaaaatgttttgTTGTTACATCCGAACTTTGCGGTGAAGTTCATTAAGCGACAAGCGAATATGGTGGCTCATACGCTTGCTAGGGCGGCCGTTTCTTGGTCTAGTCGCTGTGTTTTTGAGACATTACCTACTTGTGTTGCTGGGGGTGCAGCATCTGGCAAAAAAACAGTTTGTGATATGATTGTTCAACAGCTTCATGATCAACGAGTTGTGCTTGACTCTTTTTACAATAACTTGACCGAGGAAGAACGAGCAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGGAATTGCTTCGTGTTATGGATAAGCTGAAGCACGGTGAAGCTGTAGATCTTCCAAAGTATGATTTTAAGATTTACAAAAGTGATGCGTTAAGGAGGGTGAACTCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTTCACGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACCAGCGAGAAGGATCGGGATATTGGAGCTATTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTCATTCTTCCAACAAAAAAGTATGCCGATATAATCATACCTCGTGGAGGAGATAATCATGTAGCTGTTGATTTGATTGTTCAGCATATCCGTACAAAGCTCGGTCAGCATGACTTGTGTAAAATATATCCGAATTTATACGTCATTCAGTCAACTTTTCAGATACGAGGCATGCATACCCTTATACGTGATGCTCAGATAACGAAGcatgattttgtattttatgcCGACCGTTTGATTCGTTTGGTTGTAGAACATGGTTTGGGACATCTTCCATTTACTGAAAAGCAAGTAGTCACTCCCACCGgTTCTGTATACACCGGTGTGGATTTTTGTAAGAGATTGTGCGGTGTCTCTGTCATCAGAAGCGGAGGGCTTGGGATGCATGGACAGAACCGCATCTGTATAGACCAGACCTGTTTTCTGTTGTATTGTATTCCTTGTGAAAGGAGTTTAATTAGGGTTGTGACGTTACTTGTAATTCGGCTGTGCGTACCAGAATCCaacattatatttcttaatcTCATATCTGCTCCTAAAGGTGTTCATGTGGTCTGCAAAAGTTTCCCAAGAATTAAAATAGTGACATCTGAGATAGAGATTGGTTTGAACGAAGATTTTCGTGTCATACCGGGCATGGGTGAGTTTGGAGATCGGTACTTTGGAACCGATGATGATGAACAAGTGATGGTTATTTCACAGTAA 1386 0.3968 MSMVNAIRHLRGGYSEFSAIIFNIKNVLLLHPNFAVKFIKRQANMVAHTLARAAVSWSSRCVFETLPTCVAGGAASGKKTVCDMIVQQLHDQRVVLDSFYNNLTEEERARVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDLPKYDFKIYKSDALRRVNSSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTSEKDRDIGAILDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAVDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYADRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGGLGMHGQNRICIDQTCFLLYCIPCERSLIRVVTLLVIRLCVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDEQVMVISQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03707 461 PANTHER URIDINE KINASE 380 452 - -
Tsu05g03707 461 SUPERFAMILY PRTase-like 263 451 IPR029057 -
Tsu05g03707 461 PRINTS Uridine kinase signature 192 202 - -
Tsu05g03707 461 PRINTS Uridine kinase signature 92 103 - -
Tsu05g03707 461 PRINTS Uridine kinase signature 228 241 - -
Tsu05g03707 461 PRINTS Uridine kinase signature 65 82 - -
Tsu05g03707 461 PRINTS Uridine kinase signature 137 152 - -
Tsu05g03707 461 PRINTS Uridine kinase signature 206 217 - -
Tsu05g03707 461 PANTHER URIDINE KINASE-LIKE PROTEIN 3 45 362 - -
Tsu05g03707 461 CDD UMPK 70 260 IPR000764 -
Tsu05g03707 461 Gene3D - 368 450 IPR029057 -
Tsu05g03707 461 Gene3D - 264 367 IPR029057 -
Tsu05g03707 461 PANTHER URIDINE KINASE-LIKE PROTEIN 3 380 452 - -
Tsu05g03707 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 253 IPR027417 -
Tsu05g03707 461 Pfam Phosphoribulokinase / Uridine kinase family 70 248 IPR006083 GO:0005524|GO:0016301
Tsu05g03707 461 PANTHER URIDINE KINASE 45 362 - -
Tsu05g03707 461 Pfam Uracil phosphoribosyltransferase 278 363 - -
Tsu05g03707 461 Pfam Uracil phosphoribosyltransferase 380 450 - -
Tsu05g03707 461 Gene3D - 68 263 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03707 Tsu-Chr5 48359273 48363241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03707 33 453 PRT Gene Family AT4G26510 68.943 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03707 K00876 - gmx:100527893 649.432