Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03694 ATGGATAATTCAAATGAAGCATCATCATCATTGAGTTTTGTATCATCTCCTCATTTATCAAATGGTTCAAGTAATAATCAGAACAATGAACATGTAGCAAATATTGAAATTGTGAGTTTGAATAAGCTAAGTGGAAGCCTTGAGAAGTTATTATTAAGTGATGTTGATTATGATTATTGTGATGCTGAGATTGTTGTTGAAGAAATTCCTGTTGGTATTCATCGATGTATACTCGCTTCGCGAAGTCAGTTTTTTCATGAGCTTTTTAAGAAAGGGAAAGATGGAGATGTGAAGGAAGGAAAGGGAAAACCAAGGTATTTCATGAAAGATTTAGTGGCTTATGGTAGTGTTGGATATGAAgcttttgttgttttcttgcATTATTTGTATACTGGAAAGTTAAAGGCTCCACCAACAGAAGTTACAACATGTGTTGATGAAGCTTGTATTCACGATGCGTGTCGTCCAGCTATTAATTATGCTTTGGAACTTATGTATGCTTCTGCCAATTTTAAGATGAAGGAGCTGGTTTTACTTTTTCAGAGGTTTCTCCTAAACTTTGTTGACAAGGCTCTTGTAGAAGATGTGATTCCTATTCTTATGGCTGCACATCACTGCACCCTAGATCAGCTTCTCTCTCCTTGCATTCAGAGAGTAGCAAGGTCTGACATGGATATTATATCTTTGGAAAGAGAACTTCCTCATGAAGTTGTGACCGAAATCAAGTCGCTCCGAGTCCAATCTCTTCCAGAATCCTCTCCCGATGCAATGGAAGTGGAACCTGTGAATGTGAACGTGAATGATAAGAGTGTCAGGAAAATCCTTAAAGCATTAGACTCTGATGATGTTGAGTTACTGAAGCTTCTTTTAGAGGAATCTAGTGTTACTCTTGACGATGCCTGTGCACTACACTATGCCTGTGCACATTGTGATTCTAAGGTTGTTCAAGAAGTTCTTACTCTAGGATTAGCTGATATTCTCCTTAAGAATCCCCGTGGATACACAGTTCTTCATGTCGCCGCAAGACGAAAGGATCCATCCATTTTGGTTGCACTGCTGAAGAAAGGTGCCTGTGCATCAGAAACAACTCTTGATGGACAAACTGCTCTTTCAATTTGTCAGAGATTGACGAGGCGAAAGGATTATCATGAGAAAACAGTGCAGGGAAAGGAGTCTCACAAGGATAGGCTTTGTGTTGATGTACTTGAAAGAGAGATGAGAAGAAATTCTATGTCAGTGAACATGGAAGTTTTGTCACAGTTAACTGCTGATGACTTGCACATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGGATGTTCTTTCCTGCTGAGGCTAAGGTAGCCATAGAGAATGCCGAGGCAGATTCAACATCATTGTATGCAACTTCATCACTTGTAAAAGGCAACATAAAAGAAGTAGATCTAAATGAAACTCCTTCTATTAGAACAAGAAAACTTCAATTAAGATTACAATCCCTTGTAAAAACAGTTGAGAATGGTAGGCGCTTTTTCCCGCATTGTTCTGAGGTGCTTGATAAATTTCTGGAGGACGATATGCCGGATGTTTTCGTCCTAGAGAAAGGCACCGAAGAAgagcaaagaaaaaagaaagcaCGGTTCATGGAACTTAAAGATGAGGTGCAGAAGGCCTTTCACAAAGATATGGCTGAAAATAACCATTCAGGTCTTCAATCTTCATTGTCTTCTACATCATCCACAACTCGTAGGGAAAGTCTTAACCATAAAATGAGGAGAAAATGA 1770 0.3814 MDNSNEASSSLSFVSSPHLSNGSSNNQNNEHVANIEIVSLNKLSGSLEKLLLSDVDYDYCDAEIVVEEIPVGIHRCILASRSQFFHELFKKGKDGDVKEGKGKPRYFMKDLVAYGSVGYEAFVVFLHYLYTGKLKAPPTEVTTCVDEACIHDACRPAINYALELMYASANFKMKELVLLFQRFLLNFVDKALVEDVIPILMAAHHCTLDQLLSPCIQRVARSDMDIISLERELPHEVVTEIKSLRVQSLPESSPDAMEVEPVNVNVNDKSVRKILKALDSDDVELLKLLLEESSVTLDDACALHYACAHCDSKVVQEVLTLGLADILLKNPRGYTVLHVAARRKDPSILVALLKKGACASETTLDGQTALSICQRLTRRKDYHEKTVQGKESHKDRLCVDVLEREMRRNSMSVNMEVLSQLTADDLHMRLDYLENRVAFARMFFPAEAKVAIENAEADSTSLYATSSLVKGNIKEVDLNETPSIRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKFLEDDMPDVFVLEKGTEEEQRKKKARFMELKDEVQKAFHKDMAENNHSGLQSSLSSTSSTTRRESLNHKMRRK 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03694 589 Pfam Domain of unknown function (DUF3420) 223 274 IPR024228 -
Tsu05g03694 589 SUPERFAMILY Ankyrin repeat 273 375 IPR036770 -
Tsu05g03694 589 SMART ANK_2a 332 361 IPR002110 GO:0005515
Tsu05g03694 589 SMART ANK_2a 298 328 IPR002110 GO:0005515
Tsu05g03694 589 SMART BTB_4 60 188 IPR000210 GO:0005515
Tsu05g03694 589 ProSiteProfiles BTB domain profile. 60 138 IPR000210 GO:0005515
Tsu05g03694 589 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 587 - -
Tsu05g03694 589 ProSiteProfiles Ankyrin repeat profile. 332 357 IPR002110 GO:0005515
Tsu05g03694 589 CDD BTB_POZ_NPR_plant 41 188 - -
Tsu05g03694 589 Gene3D Potassium Channel Kv1.1; Chain A 22 220 IPR011333 -
Tsu05g03694 589 Pfam Ankyrin repeats (3 copies) 280 357 IPR002110 GO:0005515
Tsu05g03694 589 MobiDBLite consensus disorder prediction 561 579 - -
Tsu05g03694 589 MobiDBLite consensus disorder prediction 555 589 - -
Tsu05g03694 589 MobiDBLite consensus disorder prediction 1 27 - -
Tsu05g03694 589 Pfam NPR1/NIM1 like defence protein C terminal 374 573 IPR021094 -
Tsu05g03694 589 Pfam BTB/POZ domain 58 141 IPR000210 GO:0005515
Tsu05g03694 589 Gene3D - 265 406 IPR036770 -
Tsu05g03694 589 ProSiteProfiles Ankyrin repeat region circular profile. 332 357 - -
Tsu05g03694 589 PANTHER REGULATORY PROTEIN NPR3 1 587 IPR044292 GO:0009862|GO:2000022|GO:2000031
Tsu05g03694 589 SUPERFAMILY POZ domain 53 186 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03694 Tsu-Chr5 48223309 48227055 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu05g03694 NPR1_like_C 9.4e-83 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03694 K14508 - gmx:100814739 838.95