Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03681 ATGGAGTTAAATTTCTACCTTAAAAACTCAAAATGGGTATCAACAGTAGCAAGCATATGGATTCAATGCACAAGTGGATCACTCTACACTTTCTCAATCTACTCACAAACACTAAAGTCAACGCAACACTATGATCAGTCAACGCTTGACATTGTTTCTGTTTCCAAAGACATTGGAGTCAACGTTGGTGTTCTGTCTGGTCTTTTATATGATTTCCTTGCCACTAGAACTTCAATTGGGCCATGGATCGTTCATTTTTTGGGCTCGGCCCAATGTTTCTTGGGCTATTTTCTCATTTGGGCTGCTGTTTCCGGTCTTCTTCCGCCGGTGCCGGTGCCGATCATGTGCCTGTTTATGTTTTTGACTGCTCATGGTCAGAGTTTCTTTAACACTTCTAATGTTGTCACTGGTGTTCATAATTTTCCTAATTATAGTGGAACCATTGTTGGTATCTTAAAGggatttCTAGGTCTAAGTGGAGCAATATTAATTCAAGTGTATCGAACAATATTCAACAACAACCCTATATCATATCTGCTGATGCTATCACTCTTACCGCCTATCAACACTTCAATCCTTATGTGGTTTGTAAGAATCCACAACAATCATGACGCAGTGTCAGAAGAAAAGAAGTATCTCAACATATTTTCTTTGACGGCTCTCATTATTGCTGCATATCTTATGATTGTTATAATCCTAGAGAATATCTTCATTCTACAATTGCCGATCCGCATATTTACATTCATTCTGCTTATGATGCTGTTAGCCTCACTTCTTTGCATTGCATTTAAAGCACACGAAAAGTGCGCTTCTAATAGCGCTTCAGAAAGTTTTCTTGCTGAAGGGTCCAACCTAATTGCAAGAGAAGATTCTTCCAGCAACCAAAGGACTATGCAACAAGGAGAAAATCTGAATCTTTTCGAAGCAGCAAAAACAGTGAACTTTtggattttgtttgtttctatgGCATGTGGAATGGGATCAGGACTCGCGACGGTTAACAATATGAGCCAAATAGGAGAATCCCTTGGTTATTCCACCGTTGAAACAGGTTCGCTAGTAGCTTTGTATAGCATTTGGAATTTTCTTGGTCGTTTTGGAGCTGGTTATGTATCAGATTATTTTTTACACACAAGAGGATGGGCAAGACCTCTTTTTATGGTGATCACATTGATGATCATGAGCCTTGGTCATGTCGTTATTGCTTATGGACTTCCGGGCGCTCTATATGTCGGTTCAATATTGGTCGGTATTTGTTACGGCTCTCAGTGGTCGTTAATGCCTACGATCACTTCTGAGATATTTGGTGTAGAACATATGGGAAGCATATTCAACACCATTTCCATAGCAAGTCCGGCGGGTTCGTATATATTCTCTGTAAGAGTAGTTGGTTATATGTATGATAAAGAAGCATCGGAAGAAGGAAATATATGTCTTGGAACTCATTGTTTTATGTTTCCTTTTCTCATTATGGCATCTGCTACTATTCTTGGTTCTCTAACagctttgtgtttgtttttgcgGACTAGACGCTTTTATGAGCAGGTAGTTCTTAGAAGAATTCAAAATGTTCTATGA 1578 0.3809 MELNFYLKNSKWVSTVASIWIQCTSGSLYTFSIYSQTLKSTQHYDQSTLDIVSVSKDIGVNVGVLSGLLYDFLATRTSIGPWIVHFLGSAQCFLGYFLIWAAVSGLLPPVPVPIMCLFMFLTAHGQSFFNTSNVVTGVHNFPNYSGTIVGILKGFLGLSGAILIQVYRTIFNNNPISYLLMLSLLPPINTSILMWFVRIHNNHDAVSEEKKYLNIFSLTALIIAAYLMIVIILENIFILQLPIRIFTFILLMMLLASLLCIAFKAHEKCASNSASESFLAEGSNLIAREDSSSNQRTMQQGENLNLFEAAKTVNFWILFVSMACGMGSGLATVNNMSQIGESLGYSTVETGSLVALYSIWNFLGRFGAGYVSDYFLHTRGWARPLFMVITLMIMSLGHVVIAYGLPGALYVGSILVGICYGSQWSLMPTITSEIFGVEHMGSIFNTISIASPAGSYIFSVRVVGYMYDKEASEEGNICLGTHCFMFPFLIMASATILGSLTALCLFLRTRRFYEQVVLRRIQNVL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03681 525 CDD MFS_Mch1p_like 10 498 - -
Tsu05g03681 525 SUPERFAMILY MFS general substrate transporter 14 202 IPR036259 -
Tsu05g03681 525 ProSiteProfiles Major facilitator superfamily (MFS) profile. 313 525 IPR020846 GO:0022857
Tsu05g03681 525 Gene3D MFS general substrate transporter like domains 306 516 IPR036259 -
Tsu05g03681 525 Pfam Major Facilitator Superfamily 318 510 IPR011701 GO:0022857|GO:0055085
Tsu05g03681 525 Pfam Nodulin-like 11 262 IPR010658 -
Tsu05g03681 525 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 9 524 - -
Tsu05g03681 525 SUPERFAMILY MFS general substrate transporter 219 511 IPR036259 -
Tsu05g03681 525 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03681 Tsu-Chr5 48173179 48175877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03681 9 523 Nodulin-like Gene Family AT1G74780 54.906 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03681 - - gmx:100814668 825.083