Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu05g03664 | ATGATTACCACAATTCTCCGAAGAGCTTCTTCATCTCTCTCAAAGCGTGCAATCCCTGCCGCCGAAGCTCTCCTTTCCACCACCGCCGCCGGTGAACTTCGACAACTCTCCGTCCTCACAGCAAAATCCTTCCACTCAAAATCACAACCATTGCTATTTCGTGCTTCTTTGTCTTCTCGTGCTGGTTATGCTGCTGAAGCTTTTCCATACGAAGAACCCTCGAAAGTAGTGAATAGTGATGATGGTCTTGAGATCAAGAAGCTTGGAATTTCTCAGGATATTGTTTCTGCTTTGGAAAAGAAAGGAATCACTAAGCTTTTTCCCATTCAGaGGGCTGTGCTTGAACCTGCTATGCAAGGTCGTGATATGATCGGTCGTGCTAGAACCGGAACTGGAAAAACTCTTGCTTTTGGGATACCCATTATGGATAAGATCATTCAGTTTAATGCTAAACATGgGCGAGGAAGGGATCCTCTGGCTTTGGTTTTGGCACCAACTAGAGAACTTGCAAAGCAAGTGGAGAAGGAATTCTCTGAGGGGGCGCCTAACTTGGATACTATCTGTGTTTACGGGGGTACACCCATTTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATTGCGGTTGGCACGCCGGGACGAATTATTGATCTTCTTAATAGAGGTGCTCTGAATTTGAAGGAAGTTCAGTTTGTTATTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAGGAGGATGTGGAGAAGATCTTGGAGAGATTGCCTGCCAAGAGACAAACTCTTATGTTTTCTGCAACAATGCCAACTTGGATAAAGCAGTTAACACGAAATTACCTAAAAGATCCCCTAACCATTGATCTCGTTGGAGATTCCGATCAGAAGCTAGCAGATGGAATTTCAATGTACTCAATTGCATCTGATGCGTACGTCAAAGCAGGAATTCTTGTTCCTCTGATAAAAGAACATGCAAAGGGAGGAAAATGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGAATATCATATGGCATGTCAAAAAGTATTCCATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGAGAAAGAACTCTTGCTGGATTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTGCACGTGGGCTCGATATACCTAATGTTGATCTTGTAATTCATTATGAGCATCCCAATAATTCAGAGATATTTGTTCACCGATCTGGACGAACAGGTCGTGCTGGCAAGAAAGGAACAGTTATTCTAATTTATACAGATGACCAATCCAGGACTCTTAGGACTATTGAGCGTGATGTAGGCTGCAGATTTAACGAGTTACCAAAGATTGCTGTTGATAGTGCATCAGTGGGTGCATTTGCTAGCATGGGTGGTGGatttggtggtggtggttcaaGAGGTGGATTTGGTGACTCAGGCTTTAACCGTGGTCCTGGATCTGGTTCAAGAGGTGGATTTGGTGATTCAGGCTTTAACCGTGGTCCTGCATCTAACCGTTCTGGGGGCTATGGTAATTTTGGTGAAAATAGATATGGAGGTGGTGGTTCAAGTTCTGGTCGGTTTGGCTCCTTTGGTTCAGATACTTCAGGAAATAGATCTGGAGGATCACCCAGTGCATTTAAGTTTAGCGGACAAGGTAGTTCAGACCGCCCAGGTAGTTTTGGAGATTTTGTGTCGGGTAAAACTAgcggatttggatttggtgaTCGCCGCGGCCGGGATTAG | 1764 | 0.4297 | MITTILRRASSSLSKRAIPAAEALLSTTAAGELRQLSVLTAKSFHSKSQPLLFRASLSSRAGYAAEAFPYEEPSKVVNSDDGLEIKKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFSEGAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPLTIDLVGDSDQKLADGISMYSIASDAYVKAGILVPLIKEHAKGGKCIVFTQTKRDADRISYGMSKSIPCEALHGDISQAQRERTLAGFRNGHFNVLVATDVAARGLDIPNVDLVIHYEHPNNSEIFVHRSGRTGRAGKKGTVILIYTDDQSRTLRTIERDVGCRFNELPKIAVDSASVGAFASMGGGFGGGGSRGGFGDSGFNRGPGSGSRGGFGDSGFNRGPASNRSGGYGNFGENRYGGGGSSSGRFGSFGSDTSGNRSGGSPSAFKFSGQGSSDRPGSFGDFVSGKTSGFGFGDRRGRD | 587 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu05g03664 | 587 | Pfam | Helicase conserved C-terminal domain | 316 | 422 | IPR001650 | - | |
Tsu05g03664 | 587 | SMART | ultradead3 | 102 | 305 | IPR014001 | - | |
Tsu05g03664 | 587 | Gene3D | - | 310 | 463 | IPR027417 | - | |
Tsu05g03664 | 587 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 157 | 443 | IPR027417 | - | |
Tsu05g03664 | 587 | CDD | SF2_C_DEAD | 314 | 431 | - | - | |
Tsu05g03664 | 587 | MobiDBLite | consensus disorder prediction | 482 | 587 | - | - | |
Tsu05g03664 | 587 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 317 | 461 | IPR001650 | - | |
Tsu05g03664 | 587 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 83 | 111 | IPR014014 | GO:0003724 | |
Tsu05g03664 | 587 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 114 | 288 | IPR014001 | - | |
Tsu05g03664 | 587 | MobiDBLite | consensus disorder prediction | 532 | 565 | - | - | |
Tsu05g03664 | 587 | Pfam | DEAD/DEAH box helicase | 107 | 276 | IPR011545 | GO:0003676|GO:0005524 | |
Tsu05g03664 | 587 | Gene3D | - | 84 | 292 | IPR027417 | - | |
Tsu05g03664 | 587 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE | 35 | 512 | - | - | |
Tsu05g03664 | 587 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 35 | 512 | - | - | |
Tsu05g03664 | 587 | SMART | helicmild6 | 342 | 422 | IPR001650 | - | |
Tsu05g03664 | 587 | CDD | DEADc | 94 | 289 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu05g03664 | Tsu-Chr5 | 48031975 | 48037101 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu05g03664 | 76 | 459 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.481 | 1.02e-68 | 226 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu05g03664 | - | - | gmx:100778436 | 770 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu03g01496 | 03 | 14645736 | 14651140 | Tsu05g03664 | 05 | 48031975 | 48037101 | PCT |