Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03664 ATGATTACCACAATTCTCCGAAGAGCTTCTTCATCTCTCTCAAAGCGTGCAATCCCTGCCGCCGAAGCTCTCCTTTCCACCACCGCCGCCGGTGAACTTCGACAACTCTCCGTCCTCACAGCAAAATCCTTCCACTCAAAATCACAACCATTGCTATTTCGTGCTTCTTTGTCTTCTCGTGCTGGTTATGCTGCTGAAGCTTTTCCATACGAAGAACCCTCGAAAGTAGTGAATAGTGATGATGGTCTTGAGATCAAGAAGCTTGGAATTTCTCAGGATATTGTTTCTGCTTTGGAAAAGAAAGGAATCACTAAGCTTTTTCCCATTCAGaGGGCTGTGCTTGAACCTGCTATGCAAGGTCGTGATATGATCGGTCGTGCTAGAACCGGAACTGGAAAAACTCTTGCTTTTGGGATACCCATTATGGATAAGATCATTCAGTTTAATGCTAAACATGgGCGAGGAAGGGATCCTCTGGCTTTGGTTTTGGCACCAACTAGAGAACTTGCAAAGCAAGTGGAGAAGGAATTCTCTGAGGGGGCGCCTAACTTGGATACTATCTGTGTTTACGGGGGTACACCCATTTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATTGCGGTTGGCACGCCGGGACGAATTATTGATCTTCTTAATAGAGGTGCTCTGAATTTGAAGGAAGTTCAGTTTGTTATTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAGGAGGATGTGGAGAAGATCTTGGAGAGATTGCCTGCCAAGAGACAAACTCTTATGTTTTCTGCAACAATGCCAACTTGGATAAAGCAGTTAACACGAAATTACCTAAAAGATCCCCTAACCATTGATCTCGTTGGAGATTCCGATCAGAAGCTAGCAGATGGAATTTCAATGTACTCAATTGCATCTGATGCGTACGTCAAAGCAGGAATTCTTGTTCCTCTGATAAAAGAACATGCAAAGGGAGGAAAATGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGAATATCATATGGCATGTCAAAAAGTATTCCATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGAGAAAGAACTCTTGCTGGATTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTGCACGTGGGCTCGATATACCTAATGTTGATCTTGTAATTCATTATGAGCATCCCAATAATTCAGAGATATTTGTTCACCGATCTGGACGAACAGGTCGTGCTGGCAAGAAAGGAACAGTTATTCTAATTTATACAGATGACCAATCCAGGACTCTTAGGACTATTGAGCGTGATGTAGGCTGCAGATTTAACGAGTTACCAAAGATTGCTGTTGATAGTGCATCAGTGGGTGCATTTGCTAGCATGGGTGGTGGatttggtggtggtggttcaaGAGGTGGATTTGGTGACTCAGGCTTTAACCGTGGTCCTGGATCTGGTTCAAGAGGTGGATTTGGTGATTCAGGCTTTAACCGTGGTCCTGCATCTAACCGTTCTGGGGGCTATGGTAATTTTGGTGAAAATAGATATGGAGGTGGTGGTTCAAGTTCTGGTCGGTTTGGCTCCTTTGGTTCAGATACTTCAGGAAATAGATCTGGAGGATCACCCAGTGCATTTAAGTTTAGCGGACAAGGTAGTTCAGACCGCCCAGGTAGTTTTGGAGATTTTGTGTCGGGTAAAACTAgcggatttggatttggtgaTCGCCGCGGCCGGGATTAG 1764 0.4297 MITTILRRASSSLSKRAIPAAEALLSTTAAGELRQLSVLTAKSFHSKSQPLLFRASLSSRAGYAAEAFPYEEPSKVVNSDDGLEIKKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFSEGAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPLTIDLVGDSDQKLADGISMYSIASDAYVKAGILVPLIKEHAKGGKCIVFTQTKRDADRISYGMSKSIPCEALHGDISQAQRERTLAGFRNGHFNVLVATDVAARGLDIPNVDLVIHYEHPNNSEIFVHRSGRTGRAGKKGTVILIYTDDQSRTLRTIERDVGCRFNELPKIAVDSASVGAFASMGGGFGGGGSRGGFGDSGFNRGPGSGSRGGFGDSGFNRGPASNRSGGYGNFGENRYGGGGSSSGRFGSFGSDTSGNRSGGSPSAFKFSGQGSSDRPGSFGDFVSGKTSGFGFGDRRGRD 587
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03664 587 Pfam Helicase conserved C-terminal domain 316 422 IPR001650 -
Tsu05g03664 587 SMART ultradead3 102 305 IPR014001 -
Tsu05g03664 587 Gene3D - 310 463 IPR027417 -
Tsu05g03664 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 443 IPR027417 -
Tsu05g03664 587 CDD SF2_C_DEAD 314 431 - -
Tsu05g03664 587 MobiDBLite consensus disorder prediction 482 587 - -
Tsu05g03664 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 461 IPR001650 -
Tsu05g03664 587 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Tsu05g03664 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 288 IPR014001 -
Tsu05g03664 587 MobiDBLite consensus disorder prediction 532 565 - -
Tsu05g03664 587 Pfam DEAD/DEAH box helicase 107 276 IPR011545 GO:0003676|GO:0005524
Tsu05g03664 587 Gene3D - 84 292 IPR027417 -
Tsu05g03664 587 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 35 512 - -
Tsu05g03664 587 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 512 - -
Tsu05g03664 587 SMART helicmild6 342 422 IPR001650 -
Tsu05g03664 587 CDD DEADc 94 289 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu05g03664 Tsu-Chr5 48031975 48037101 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03664 76 459 Eukaryotic Initiation Factors Gene Family AT3G19760 32.481 1.02e-68 226
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03664 - - gmx:100778436 770
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01496 03 14645736 14651140 Tsu05g03664 05 48031975 48037101 PCT