Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03663 ATGGATTCTCCTACTTTCACTTTTTTTCTCTATACCCTCTTCCTTTTATGTCTCAACACTACTCTTTctacttcttcttcatcatcatcatcatcatcacttccCATGTCTTTGAAAACACAAGCTTCTATCTTAGTTTCACTCAAACAAGATTTTGAACCAAACACTTCCTTAAAAACTTGGAACATCTCTAACTACATGTCTCTTTGTTCTTGGTATGGTATTCAATGTGACACAAACAATACTTCTGTTGTGTCACTAGACATATCAAACTTGAACATTTCAGGTACTTTTTCACCTTCCATTACAAAACTATCAAACTTAAGATTCCTCAACATATCAAACAACTTGTTCAATGGAAATCTAAGTTGGAAATTCTCTCATTTCAAAGATCTTGAAGTTTTTGATGCTTACAACAATGAGTTCAATTGTTCACTACCTATTGATATCACTAAGTTACCTAAACTCAAGTACTTGAATCTTGGAGGAAATTTTTTCAATGGTGAAATTCCTTCAAGTTATGGAAACATGATGAGTCTTAACTATTTGTCTCTTGCAGGTAATGATTTGAGAGGTTTCATACCTTATGAGCTTGGAAATCTTACTAACTTGACACATCTTTTGTTAGGATATTACAATGAGTTTGATGGTGAAATTCCATCTCATTTTGGTAATCTTGTTAATCTAGTTCATCTTGATCTTGCAAATTGCGGTTTGAAAGGTTCGATTCCGAATGAGTTAGGAAAACTTTACAAACTAGACACACTTTTCTTGCAAACCAATCAACTTAGCGGTTCGATTCCTTCACAATTAGGTAACTTGAGTAGTTTGAAATCTCTTGATATGTCAAACAATGAGTTAAGTGGAAACATACCAAATGAGTTTTCAAATCTTCATGAACTCACACTCTTGAATTTGTTCATCAATAAATTATATGGTGAAATTCCATCTTTTGTTTCTGAGTTACCAAATTTAGAAGTGTTGAAGCTTTGGCATAACAATTTCACAGGTTCTATTCCTTCAAAGTTAGGACAGAATGGTAAATTGAGTGAGCTTGATTTATCAACAAATAAACTCACTGGATTAGTACCTAAATCTTTATGCATTGGAAAAAAGCTTAAGATTTTAATCCTGCTTAACAATTTTCTGTTTGGTTCTTTGCCTAATGAACTTGGTGAATGTTACACACTTCAACGAGTTCGTTTAGGACAAAACTATTTAACAGGTTCTATACCAAAAGGTTTTCTTTATTTGCCTCAAATTTCACTTCTTGAACTTCAAAACAATTATCTTAGTGGTTTTCTTCCGCCACAAGAAATCACAAACACAAACAGTTCTAAACTCGGAGAGATGAATCTTTCGAATAATCGTTTATCTGGTTCTCTACCTAGTTCTATTGGAAACTTTCCAAATTTGCAGATTCTGCTTCTTCATGGAAATAGATTCTCAGGTGAAATTCCTCAAGATATAGGAAAGTTGAAGAACATTCTTAGGCTAGATATGAGTTTCAACAACTTTTCAGGAAAAATTCCTATTGAGATAGGTGAATGTTCTTTGCTTACCAATTTGGATTTGAGTCAGAATCAATTATCAGGTCCTATTCCAATTCAGCTTTCTCAAATTCACATACTGAACTATCTTAATGTCTCATGGAACAACTTAAACCAAACACTTCCTAAAGAACTTGGTGCTATAAAAGGCTTAACTTCGGCCGATTTTTCTCATAATGACTTATCTGGCTCAATTCCTGAAATAGGCCAATTCTCAGTGTTCAATTCTACTTCCTTTATCGGTAATTCGAAGTTATGTGGATATGATTTGAATCCATGCAACCGTTCTTCATCAACGGTATCCGATTCTCAAGATCAAAACAACGGTCGTGCGAAACCTGGAGTTCTGGTAAAATACAAGCTTCTATTTGCATTAGCACTATTGTTTTGTTCATTGGTTTTCGCAACAATAGCTATAATCAAAAGCCGAAAAGGAATTAGAAGAGACTCGAATTCGTGGAAGTTAACAGCATTTCAGAAGATTGAATATGGAAGTGAAGATATCTTAGGTTGTATAAAGGAAAGTAACATCATAGGAAGAGGAGGTGCTGGTGTTGTATATGGGGGTACAATGCCAAATGGTGAAAAAATAGCTGTGAAAAAGTTATTAGGAATTAACAAAGGTTGTTCTTATGATAATGGTTTATCAGCTGAAATAAAAACACTTGGTAGAATAAGGCATAGATACATTGTGAAGTTATTAGCATTTTGTTCAAATAGAGATACAAATTTGCTTGTTTATGAGTATATGACAAATGGAAGTTTAGGTGAAGTTTTACATGGTAAAAGAGGGGGGTATCTTGGTTGGGAAGTAAGGGTGAAAATAGCAATTGAAGCTGCTAAAGGACTATGTTATTTGCATCATGATTGTTGTCCTATGATTGTTCATAGAGATGTTAagtcaaataatattttgttggaTTCTGAATTTGAAGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGTTGCAAGAGAATAATGGTGGGACTTCTGAATGCATGTCTTCTATTGTTGGTTCTTATGGCTACATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTATATAGTTTTGGAGTGGTGTTACTAGAACTACTAACAGGTAGAAGACCAGTGGGAGATTTTGGTGAAGAAGGAATGGATATTGTTCAATGGACAAAGTTACAAACTGATTTGAACAAAGAAAAAGTTGTGAAGATTCTTGATAAGAGATTACATCACAATATTCCTTTGGATGAAGCAATGCAATTATTCTTTGTGGCTATGTTATGTGTTCAAGAACAAAGTGTGGAAAGACCAACTATGAGAGAAGTTGTTGAAATGCTAGTACAAGCAAAGCAACCAAATATATTTCAAGTGTAG 2931 0.333 MDSPTFTFFLYTLFLLCLNTTLSTSSSSSSSSSLPMSLKTQASILVSLKQDFEPNTSLKTWNISNYMSLCSWYGIQCDTNNTSVVSLDISNLNISGTFSPSITKLSNLRFLNISNNLFNGNLSWKFSHFKDLEVFDAYNNEFNCSLPIDITKLPKLKYLNLGGNFFNGEIPSSYGNMMSLNYLSLAGNDLRGFIPYELGNLTNLTHLLLGYYNEFDGEIPSHFGNLVNLVHLDLANCGLKGSIPNELGKLYKLDTLFLQTNQLSGSIPSQLGNLSSLKSLDMSNNELSGNIPNEFSNLHELTLLNLFINKLYGEIPSFVSELPNLEVLKLWHNNFTGSIPSKLGQNGKLSELDLSTNKLTGLVPKSLCIGKKLKILILLNNFLFGSLPNELGECYTLQRVRLGQNYLTGSIPKGFLYLPQISLLELQNNYLSGFLPPQEITNTNSSKLGEMNLSNNRLSGSLPSSIGNFPNLQILLLHGNRFSGEIPQDIGKLKNILRLDMSFNNFSGKIPIEIGECSLLTNLDLSQNQLSGPIPIQLSQIHILNYLNVSWNNLNQTLPKELGAIKGLTSADFSHNDLSGSIPEIGQFSVFNSTSFIGNSKLCGYDLNPCNRSSSTVSDSQDQNNGRAKPGVLVKYKLLFALALLFCSLVFATIAIIKSRKGIRRDSNSWKLTAFQKIEYGSEDILGCIKESNIIGRGGAGVVYGGTMPNGEKIAVKKLLGINKGCSYDNGLSAEIKTLGRIRHRYIVKLLAFCSNRDTNLLVYEYMTNGSLGEVLHGKRGGYLGWEVRVKIAIEAAKGLCYLHHDCCPMIVHRDVKSNNILLDSEFEAHVADFGLAKFLLQENNGGTSECMSSIVGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGEEGMDIVQWTKLQTDLNKEKVVKILDKRLHHNIPLDEAMQLFFVAMLCVQEQSVERPTMREVVEMLVQAKQPNIFQV 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03663 976 Pfam Leucine Rich Repeat 276 298 IPR001611 GO:0005515
Tsu05g03663 976 Pfam Leucine Rich Repeat 228 250 IPR001611 GO:0005515
Tsu05g03663 976 Pfam Leucine Rich Repeat 155 173 IPR001611 GO:0005515
Tsu05g03663 976 SUPERFAMILY Protein kinase-like (PK-like) 686 966 IPR011009 -
Tsu05g03663 976 SMART serkin_6 689 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03663 976 SMART LRR_typ_2 153 177 IPR003591 -
Tsu05g03663 976 SMART LRR_typ_2 469 493 IPR003591 -
Tsu05g03663 976 SMART LRR_typ_2 322 346 IPR003591 -
Tsu05g03663 976 SMART LRR_typ_2 274 297 IPR003591 -
Tsu05g03663 976 SMART LRR_typ_2 226 250 IPR003591 -
Tsu05g03663 976 Gene3D Ribonuclease Inhibitor 198 272 IPR032675 -
Tsu05g03663 976 Gene3D Ribonuclease Inhibitor 273 348 IPR032675 -
Tsu05g03663 976 ProSiteProfiles Protein kinase domain profile. 689 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03663 976 SUPERFAMILY RNI-like 86 431 - -
Tsu05g03663 976 Gene3D Ribonuclease Inhibitor 349 614 IPR032675 -
Tsu05g03663 976 Gene3D Ribonuclease Inhibitor 38 197 IPR032675 -
Tsu05g03663 976 SUPERFAMILY L domain-like 372 610 - -
Tsu05g03663 976 Pfam Protein kinase domain 691 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03663 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Tsu05g03663 976 PANTHER UNNAMED PRODUCT 9 973 - -
Tsu05g03663 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 9 973 - -
Tsu05g03663 976 Gene3D Transferase(Phosphotransferase) domain 1 767 974 - -
Tsu05g03663 976 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Tsu05g03663 976 Gene3D Phosphorylase Kinase; domain 1 678 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03663 Tsu-Chr5 48010571 48015261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03663 27 967 Receptor kinase-like Gene Family AT5G65700 55.453 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu05g03663 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03663 - - gmx:100816158 1442.56