Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03659 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCACATGGTGTCATGGACGATAAAGGCCTAGGACAGGATGCTAATAATATCAATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGCGAGAAAGAATTCGATATGAACTTGGAGGCACAATATGAGAGTGACGGTGGACCAGATACTTCCTGTAGACTGCAAAATGAGGGTACGGCCAATGATGGAGATGCTATGAGAGAATCCAACTTACAGGCTGCTGGTAGTAAAGCATCTACGGTTGGAAGGTGGGGTTCAACATTTTGGAAGGACTGCCAACCAACGTGTCCTCAAAATGGTTCTGAATCTGGGAAGGAATCAAAAAGTGGATCAGACTATAGAAATGCAGGTGGATCCGAAGATAATTCAGTGGATGGAGAAACAGGAAGGCTAGACTCAGAAGATGATGATGGACAAAAGGAGGCAGGTAAAGGCCGAAGAAGCCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGACGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCATTGCATTATAATGGGATTCACAAGCCCACTGGACGGAATTCATGGCCTCAACAGATGTCTACTTCTACGAAAAGAAGTGTGCGTAGGAAATCTAGGATTTcagatgatgatggtgattacgaagaagaagatgaagtagaTGAAGATGATCCTGATGATGCAGATTTTGAGCCTGCCGCAAGTAGCCATACCTTAACCAAGGATAAAGATTGGGAAGGTGTAGGATCGGATGAAAATGAGGACAGTGATGAAAGTCTAGATGTATCTGATGATGACGAATCTTTCTATACTAAAAAACCCAAGGGAAGGCAACAAAGTAAGGTTAGAAAAAGTATAAAATCTACCAGAGATCGCAAAGCAGGTGTTGCTTCTAGCAGACAAAGAAGATTCAAATCATCTTTTGAAGATAATGATTCAACAACAGATGATTCTGACAGTGATAGTGATGACGATTTCAAAAGCACAAGAAAGAGAAGTTTCAATGTCCGCAAGAATAACAGCCGCTTTTCTGCAACGAACAATTTTTCTACCCACAGCAGTGAGGTCCGCACTTCTACTAGGGCGGTTAGGAAGATATCATATGTTGAAAGTGATGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAGGAAATTGAAGAGGACGACAGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGCACAGCTGAAGATGCCCAAAGGAATAATAGATCAACAGAGCCTGCTTTAACGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAGATTGAATTTTTGATAAAATGGAAGGGGCAATCTCATTTGCACTGTCAATGGAAGTCTTTTGCAGAGCTACAAAATCTCAGTGGCTTCAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATCAGGTACCGGAGGACAATCTCAAGGGAGGAGATTGAGGTCCATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAATAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGTAAAGATGATTCCGGTAATGTTATCCCAGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACATTGATATCGCTTTTGCTCAACATTCAATTGACGAGTATAAGGCTCGAGAGGCTGCAATGTCAGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATACGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAattttataatgacaaaaaaCCTGGTAAACCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAATTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAGATGGAATTATCTGATGGTAGATGAAGCTCATAGACTAAAAAATAGTGAGGCGCAGTTGTATACATCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGGACTCCCTTACAAAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAAAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAActttcaaaatttaaacaagGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGATCATGGCTATGGTGGGGACTCTGGAGGCAGTGACAACAGTAAACTTGAGAGAATTGTCTTCAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAGACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTAGATATACTGGCACAGTATTTGTCACTTCGAGGGTATCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGCTGCGACAGCAGGCAATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTTTAGGTATCAACCTTGCCACAGCAGACACGGTCATTATATTTGATTCTGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAagcaaaagtgttgaagaagatATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCATTTGGTGATTCAAAAACTGAATGCAGAAGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGCAAGCCTTTTTGATAAAAATGAACTGTCTGCAATCTTACGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAAAAACAACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGATAGATGAAGAAGAACAAGGCAAGGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTgcaatgatgaagatgatgcaAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCTGCATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCCAGAAATATTAAAAGCTATGCAGAGGCTGATCCATCTGAAAGgagtaataaaagaaaaaagaaggaacCTGAACAACCTGAACGAGTTCAGAAGCGCCGCAAAGCAGAGTATTCGGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTGAGAAGTTGGTCACATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTGCAGTTATGAAATTCGGGAATGAGAACCAAATCGACTTAATTGCTGCTGACGTTGGTGGTGCAGTTGTGGCAGCTCCACCTGAAGCGCAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTTCAGAAGCAGCggaaattgaaaatttggatCTAAAGGGGCCTGTGCTCGACTTTTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTACCCGGGTCCAAGAACTTCAGCTCCTAGCAAAGCGCATTAGCCGGTATGAAGATCCCATTGCACAATTCCGTGTTTTATCATATCTCAAACCTTCAAACTGGTCGAAAGGTTGTGGGTGGAATCAAAtTGATGATGCCAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGGCTTGGCCTCATGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAGCAAGAACTCGTTGTTCTTGGGGTAAAAAATGTGAATAGCAGAGTTGCACGGAAGCCTtccaagaaagagaaagaacatATGATGAATATCTCACTGTTGCGAGGacaggagaagaagaaaaaaccagGTTCTGTTAATGTCCAAATGAGAAAGGACAGGTTTCAGAAACCCCATAAGGTTGAACCTATTGTAAAAGAGGAAGGTGAAATGTCCGACAATGAAGAAGTATATGAGCAGTTTAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACTAGTGCTAATCTTCCTAAGGAAAAGGTTCTTTCAAAGATACGCAACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTCGAAAATGAAGCGGAACCCTATAAGCAAGATAGAATGACTGTACGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAACAAAATGATGAGGCCGGGGTTGGTCCCTCTGCTTCATTTAACAGAAATGGAAATCCATTCCATCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGGCTAACTACCAAATGTCAGAAcctgataataataataataccacAGGAAAATCTGAGGCATGGAAACGAAGAAGAAGATCTGAAAGTGATGATCATTTCCAGGGTCAGCCACCACCTCAAAGAATCACCAGTAATGGAGTCCGGATTACCGACCCCAACTCACTTGGGATCCTTGGTGCTGGACCATCTGACAAACGGTTTGTTAATGAGAAACCTTTTAGGACACAACCTGGTGGTGTTCCTTAA 5199 0.3939 MAFFRNFVNDTVSHGVMDDKGLGQDANNINRSVGNECTDATSSEKEFDMNLEAQYESDGGPDTSCRLQNEGTANDGDAMRESNLQAAGSKASTVGRWGSTFWKDCQPTCPQNGSESGKESKSGSDYRNAGGSEDNSVDGETGRLDSEDDDGQKEAGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIHKPTGRNSWPQQMSTSTKRSVRRKSRISDDDGDYEEEDEVDEDDPDDADFEPAASSHTLTKDKDWEGVGSDENEDSDESLDVSDDDESFYTKKPKGRQQSKVRKSIKSTRDRKAGVASSRQRRFKSSFEDNDSTTDDSDSDSDDDFKSTRKRSFNVRKNNSRFSATNNFSTHSSEVRTSTRAVRKISYVESDESEEADEGKKKKSQKEEIEEDDSDSIEKVLWHQLKGTAEDAQRNNRSTEPALTSHLFDSEFDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRTISREEIEVHDVSKEMDLEIIRQNSQVERIIADRISKDDSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIRWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFKSKDDFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGYQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGASLFDKNELSAILRFGAEELFKEERNDEESKKQLLSMNIDEILERAEKVEEKIDEEEQGKELLSAFKVANFCNDEDDASFWSRWIKPDAAFQAEEALAPRSARNIKSYAEADPSERSNKRKKKEPEQPERVQKRRKAEYSAPAVPMVDGASVQVRSWSHGNLSKRDALRFSRAVMKFGNENQIDLIAADVGGAVVAAPPEAQIELFNALIDGCSEAAEIENLDLKGPVLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSRVARKPSKKEKEHMMNISLLRGQEKKKKPGSVNVQMRKDRFQKPHKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVFENEAEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGPSASFNRNGNPFHRHMERQRGLKNMANYQMSEPDNNNNTTGKSEAWKRRRRSESDDHFQGQPPPQRITSNGVRITDPNSLGILGAGPSDKRFVNEKPFRTQPGGVP 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03659 1732 SUPERFAMILY Chromo domain-like 500 576 IPR016197 -
Tsu05g03659 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 834 IPR027417 -
Tsu05g03659 1732 CDD CD2_tandem 519 575 - -
Tsu05g03659 1732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 625 797 IPR014001 -
Tsu05g03659 1732 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1674 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 301 324 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 1204 1232 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 261 276 - -
Tsu05g03659 1732 CDD SF2_C_SNF 919 1054 - -
Tsu05g03659 1732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 933 1084 IPR001650 -
Tsu05g03659 1732 SUPERFAMILY Chromo domain-like 404 488 IPR016197 -
Tsu05g03659 1732 Pfam SNF2-related domain 632 901 IPR000330 GO:0005524|GO:0140658
Tsu05g03659 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 837 1119 IPR027417 -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 350 377 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 1669 1683 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 378 408 - -
Tsu05g03659 1732 Gene3D - 523 575 - -
Tsu05g03659 1732 SMART DUF4208_2 1510 1615 IPR025260 -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 1197 1234 - -
Tsu05g03659 1732 Coils Coil 1127 1154 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 1684 1702 - -
Tsu05g03659 1732 Pfam Chromo (CHRromatin Organisation MOdifier) domain 522 576 IPR023780 -
Tsu05g03659 1732 ProSiteProfiles Chromo and chromo shadow domain profile. 408 496 IPR000953 -
Tsu05g03659 1732 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1674 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 1619 1639 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 104 135 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 1654 1668 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 1654 1732 - -
Tsu05g03659 1732 Gene3D - 1340 1443 - -
Tsu05g03659 1732 Gene3D - 394 521 - -
Tsu05g03659 1732 SMART helicmild6 959 1043 IPR001650 -
Tsu05g03659 1732 Pfam Helicase conserved C-terminal domain 930 1043 IPR001650 -
Tsu05g03659 1732 Gene3D - 604 843 IPR038718 -
Tsu05g03659 1732 SMART ultradead3 609 808 IPR014001 -
Tsu05g03659 1732 Coils Coil 1073 1093 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 196 210 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 138 169 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 61 96 - -
Tsu05g03659 1732 SMART chromo_7 407 489 IPR000953 -
Tsu05g03659 1732 SMART chromo_7 519 578 IPR000953 -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 223 241 - -
Tsu05g03659 1732 MobiDBLite consensus disorder prediction 54 408 - -
Tsu05g03659 1732 CDD CD1_tandem 406 486 - -
Tsu05g03659 1732 Gene3D - 844 1074 IPR027417 -
Tsu05g03659 1732 ProSiteProfiles Chromo and chromo shadow domain profile. 521 585 IPR000953 -
Tsu05g03659 1732 Pfam Domain of unknown function (DUF4208) 1522 1614 IPR025260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03659 Tsu-Chr5 47972063 47993999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03659 635 1070 RAD5 or RAD16-like Gene Family AT1G02670 26.139 1.44e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu05g03659 SNF2_N 2.7e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03659 K11367 - gmx:100792398 2888.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03659 05 47972063 47993999 Tsu05g03659 05 47972063 47993999 ECH