Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu05g03659 | ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCACATGGTGTCATGGACGATAAAGGCCTAGGACAGGATGCTAATAATATCAATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGCGAGAAAGAATTCGATATGAACTTGGAGGCACAATATGAGAGTGACGGTGGACCAGATACTTCCTGTAGACTGCAAAATGAGGGTACGGCCAATGATGGAGATGCTATGAGAGAATCCAACTTACAGGCTGCTGGTAGTAAAGCATCTACGGTTGGAAGGTGGGGTTCAACATTTTGGAAGGACTGCCAACCAACGTGTCCTCAAAATGGTTCTGAATCTGGGAAGGAATCAAAAAGTGGATCAGACTATAGAAATGCAGGTGGATCCGAAGATAATTCAGTGGATGGAGAAACAGGAAGGCTAGACTCAGAAGATGATGATGGACAAAAGGAGGCAGGTAAAGGCCGAAGAAGCCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGACGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCATTGCATTATAATGGGATTCACAAGCCCACTGGACGGAATTCATGGCCTCAACAGATGTCTACTTCTACGAAAAGAAGTGTGCGTAGGAAATCTAGGATTTcagatgatgatggtgattacgaagaagaagatgaagtagaTGAAGATGATCCTGATGATGCAGATTTTGAGCCTGCCGCAAGTAGCCATACCTTAACCAAGGATAAAGATTGGGAAGGTGTAGGATCGGATGAAAATGAGGACAGTGATGAAAGTCTAGATGTATCTGATGATGACGAATCTTTCTATACTAAAAAACCCAAGGGAAGGCAACAAAGTAAGGTTAGAAAAAGTATAAAATCTACCAGAGATCGCAAAGCAGGTGTTGCTTCTAGCAGACAAAGAAGATTCAAATCATCTTTTGAAGATAATGATTCAACAACAGATGATTCTGACAGTGATAGTGATGACGATTTCAAAAGCACAAGAAAGAGAAGTTTCAATGTCCGCAAGAATAACAGCCGCTTTTCTGCAACGAACAATTTTTCTACCCACAGCAGTGAGGTCCGCACTTCTACTAGGGCGGTTAGGAAGATATCATATGTTGAAAGTGATGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAGGAAATTGAAGAGGACGACAGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGCACAGCTGAAGATGCCCAAAGGAATAATAGATCAACAGAGCCTGCTTTAACGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAGATTGAATTTTTGATAAAATGGAAGGGGCAATCTCATTTGCACTGTCAATGGAAGTCTTTTGCAGAGCTACAAAATCTCAGTGGCTTCAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATCAGGTACCGGAGGACAATCTCAAGGGAGGAGATTGAGGTCCATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAATAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGTAAAGATGATTCCGGTAATGTTATCCCAGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACATTGATATCGCTTTTGCTCAACATTCAATTGACGAGTATAAGGCTCGAGAGGCTGCAATGTCAGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATACGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAattttataatgacaaaaaaCCTGGTAAACCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAATTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAGATGGAATTATCTGATGGTAGATGAAGCTCATAGACTAAAAAATAGTGAGGCGCAGTTGTATACATCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGGACTCCCTTACAAAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAAAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAActttcaaaatttaaacaagGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGATCATGGCTATGGTGGGGACTCTGGAGGCAGTGACAACAGTAAACTTGAGAGAATTGTCTTCAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAGACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTAGATATACTGGCACAGTATTTGTCACTTCGAGGGTATCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGCTGCGACAGCAGGCAATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTTTAGGTATCAACCTTGCCACAGCAGACACGGTCATTATATTTGATTCTGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAagcaaaagtgttgaagaagatATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCATTTGGTGATTCAAAAACTGAATGCAGAAGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGCAAGCCTTTTTGATAAAAATGAACTGTCTGCAATCTTACGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAAAAACAACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGATAGATGAAGAAGAACAAGGCAAGGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTgcaatgatgaagatgatgcaAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCTGCATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCCAGAAATATTAAAAGCTATGCAGAGGCTGATCCATCTGAAAGgagtaataaaagaaaaaagaaggaacCTGAACAACCTGAACGAGTTCAGAAGCGCCGCAAAGCAGAGTATTCGGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTGAGAAGTTGGTCACATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTGCAGTTATGAAATTCGGGAATGAGAACCAAATCGACTTAATTGCTGCTGACGTTGGTGGTGCAGTTGTGGCAGCTCCACCTGAAGCGCAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTTCAGAAGCAGCggaaattgaaaatttggatCTAAAGGGGCCTGTGCTCGACTTTTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTACCCGGGTCCAAGAACTTCAGCTCCTAGCAAAGCGCATTAGCCGGTATGAAGATCCCATTGCACAATTCCGTGTTTTATCATATCTCAAACCTTCAAACTGGTCGAAAGGTTGTGGGTGGAATCAAAtTGATGATGCCAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGGCTTGGCCTCATGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAGCAAGAACTCGTTGTTCTTGGGGTAAAAAATGTGAATAGCAGAGTTGCACGGAAGCCTtccaagaaagagaaagaacatATGATGAATATCTCACTGTTGCGAGGacaggagaagaagaaaaaaccagGTTCTGTTAATGTCCAAATGAGAAAGGACAGGTTTCAGAAACCCCATAAGGTTGAACCTATTGTAAAAGAGGAAGGTGAAATGTCCGACAATGAAGAAGTATATGAGCAGTTTAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACTAGTGCTAATCTTCCTAAGGAAAAGGTTCTTTCAAAGATACGCAACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTCGAAAATGAAGCGGAACCCTATAAGCAAGATAGAATGACTGTACGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAACAAAATGATGAGGCCGGGGTTGGTCCCTCTGCTTCATTTAACAGAAATGGAAATCCATTCCATCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGGCTAACTACCAAATGTCAGAAcctgataataataataataccacAGGAAAATCTGAGGCATGGAAACGAAGAAGAAGATCTGAAAGTGATGATCATTTCCAGGGTCAGCCACCACCTCAAAGAATCACCAGTAATGGAGTCCGGATTACCGACCCCAACTCACTTGGGATCCTTGGTGCTGGACCATCTGACAAACGGTTTGTTAATGAGAAACCTTTTAGGACACAACCTGGTGGTGTTCCTTAA | 5199 | 0.3939 | MAFFRNFVNDTVSHGVMDDKGLGQDANNINRSVGNECTDATSSEKEFDMNLEAQYESDGGPDTSCRLQNEGTANDGDAMRESNLQAAGSKASTVGRWGSTFWKDCQPTCPQNGSESGKESKSGSDYRNAGGSEDNSVDGETGRLDSEDDDGQKEAGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIHKPTGRNSWPQQMSTSTKRSVRRKSRISDDDGDYEEEDEVDEDDPDDADFEPAASSHTLTKDKDWEGVGSDENEDSDESLDVSDDDESFYTKKPKGRQQSKVRKSIKSTRDRKAGVASSRQRRFKSSFEDNDSTTDDSDSDSDDDFKSTRKRSFNVRKNNSRFSATNNFSTHSSEVRTSTRAVRKISYVESDESEEADEGKKKKSQKEEIEEDDSDSIEKVLWHQLKGTAEDAQRNNRSTEPALTSHLFDSEFDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRTISREEIEVHDVSKEMDLEIIRQNSQVERIIADRISKDDSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIRWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFKSKDDFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGYQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGASLFDKNELSAILRFGAEELFKEERNDEESKKQLLSMNIDEILERAEKVEEKIDEEEQGKELLSAFKVANFCNDEDDASFWSRWIKPDAAFQAEEALAPRSARNIKSYAEADPSERSNKRKKKEPEQPERVQKRRKAEYSAPAVPMVDGASVQVRSWSHGNLSKRDALRFSRAVMKFGNENQIDLIAADVGGAVVAAPPEAQIELFNALIDGCSEAAEIENLDLKGPVLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSRVARKPSKKEKEHMMNISLLRGQEKKKKPGSVNVQMRKDRFQKPHKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVFENEAEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGPSASFNRNGNPFHRHMERQRGLKNMANYQMSEPDNNNNTTGKSEAWKRRRRSESDDHFQGQPPPQRITSNGVRITDPNSLGILGAGPSDKRFVNEKPFRTQPGGVP | 1732 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu05g03659 | 1732 | SUPERFAMILY | Chromo domain-like | 500 | 576 | IPR016197 | - | |
Tsu05g03659 | 1732 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 601 | 834 | IPR027417 | - | |
Tsu05g03659 | 1732 | CDD | CD2_tandem | 519 | 575 | - | - | |
Tsu05g03659 | 1732 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 625 | 797 | IPR014001 | - | |
Tsu05g03659 | 1732 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 | 112 | 1674 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 301 | 324 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 1204 | 1232 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 261 | 276 | - | - | |
Tsu05g03659 | 1732 | CDD | SF2_C_SNF | 919 | 1054 | - | - | |
Tsu05g03659 | 1732 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 933 | 1084 | IPR001650 | - | |
Tsu05g03659 | 1732 | SUPERFAMILY | Chromo domain-like | 404 | 488 | IPR016197 | - | |
Tsu05g03659 | 1732 | Pfam | SNF2-related domain | 632 | 901 | IPR000330 | GO:0005524|GO:0140658 | |
Tsu05g03659 | 1732 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 837 | 1119 | IPR027417 | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 350 | 377 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 1669 | 1683 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 378 | 408 | - | - | |
Tsu05g03659 | 1732 | Gene3D | - | 523 | 575 | - | - | |
Tsu05g03659 | 1732 | SMART | DUF4208_2 | 1510 | 1615 | IPR025260 | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 1197 | 1234 | - | - | |
Tsu05g03659 | 1732 | Coils | Coil | 1127 | 1154 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 1684 | 1702 | - | - | |
Tsu05g03659 | 1732 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 522 | 576 | IPR023780 | - | |
Tsu05g03659 | 1732 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 408 | 496 | IPR000953 | - | |
Tsu05g03659 | 1732 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 112 | 1674 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 1619 | 1639 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 104 | 135 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 1654 | 1668 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 1654 | 1732 | - | - | |
Tsu05g03659 | 1732 | Gene3D | - | 1340 | 1443 | - | - | |
Tsu05g03659 | 1732 | Gene3D | - | 394 | 521 | - | - | |
Tsu05g03659 | 1732 | SMART | helicmild6 | 959 | 1043 | IPR001650 | - | |
Tsu05g03659 | 1732 | Pfam | Helicase conserved C-terminal domain | 930 | 1043 | IPR001650 | - | |
Tsu05g03659 | 1732 | Gene3D | - | 604 | 843 | IPR038718 | - | |
Tsu05g03659 | 1732 | SMART | ultradead3 | 609 | 808 | IPR014001 | - | |
Tsu05g03659 | 1732 | Coils | Coil | 1073 | 1093 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 196 | 210 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 138 | 169 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 61 | 96 | - | - | |
Tsu05g03659 | 1732 | SMART | chromo_7 | 407 | 489 | IPR000953 | - | |
Tsu05g03659 | 1732 | SMART | chromo_7 | 519 | 578 | IPR000953 | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 223 | 241 | - | - | |
Tsu05g03659 | 1732 | MobiDBLite | consensus disorder prediction | 54 | 408 | - | - | |
Tsu05g03659 | 1732 | CDD | CD1_tandem | 406 | 486 | - | - | |
Tsu05g03659 | 1732 | Gene3D | - | 844 | 1074 | IPR027417 | - | |
Tsu05g03659 | 1732 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 521 | 585 | IPR000953 | - | |
Tsu05g03659 | 1732 | Pfam | Domain of unknown function (DUF4208) | 1522 | 1614 | IPR025260 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu05g03659 | Tsu-Chr5 | 47972063 | 47993999 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu05g03659 | 635 | 1070 | RAD5 or RAD16-like Gene Family | AT1G02670 | 26.139 | 1.44e-36 | 147 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Tsu05g03659 | SNF2_N | 2.7e-64 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu05g03659 | K11367 | - | gmx:100792398 | 2888.21 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu05g03659 | 05 | 47972063 | 47993999 | Tsu05g03659 | 05 | 47972063 | 47993999 | ECH |