Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03653 ATGGAAGGGTTCGGAATGAATTCGGATCTTAGCAGAACTGGTGCTGTAGAAAGAGACATCGAgcagGCCATTACTGCTTTGAAAAAAGGGGCTTGCTTGCTCAAATATGGAAGAAGGGGAAAGCCTAAGTTTTGCCCCTTTCGGCTTTCCAATGACGAATCTGTTTTGGTATGGTTCTCAGGGAAAGAAGAGAAGCACCTTAAACTGAGCCATGTCTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCGCGACCCGAGAAGGAATACCAGTCGTTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGTAAGGACAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCACGTAGCCATCACCGGAAGTGGAGAACTGAGTCAAGAAGTGATGGCATTCCATCTGAAGTTAATAGTCCTCGAACATATACAAGAAGAAGTTCTCCCTTACATTCTCCATTTGGTAGTAATGAGAGCTTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCCTATGAGAGCCCCCCTAAAAATGGTTTGGATAAAGCATTAGATGTGGTCTTGTATGCCGTTCCTCAAAAAAGTTTCTTCCCTCTGGATTCTGCCAGCGCTTCTGTCCACTCTATATCATCCGGAGGATCAGATAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAAGGATCTGgtcatgatgatggtgatgCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTGTTGGTGGTGGTAATCATAGAGTTGGGAGTGGTTTGGGTGTAAAAATTGATTCTCTATTTCCCAAAGCCTTAGAATCTGCGGTAGTTCTCGATGTGCAGAATATTGCTTGCGGTGGACGACATGCGGCATTAGTGACCAAACAAGGTGAAATTTTCTCCTGGGGAGAGGAATCAGGAGGCAGGCTCGGGCATGGTGTCGAGTCTGATGTTCTCCATCCAAAGCTTATAGACGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCAGGTGATCTTTATACATGGGGTAATGGTGCATACAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAATGGTCCCTTGGAAGGCATACATGTTTCATATATTTCATGTGGACCATGGCATACTGCCGTTGTAACATCTGCTGGGCAATTGTTCACTTTTGGTGACGGCACATTTGGTGCTTTGGGTCATGGAGATCGAAAAAGTGTTTCATTACCAAGGGAAGTTGAGTCCCTCAAAGGTCTTCGTACTATGCGGGCTTCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAACTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCACGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTTGTTGAGCATAACTTTTGTCAAGTTGCTTGTGGACACAGTCTCACTGTTGCACTGACCACCTCAGGCCATGTCTATGCGATGGGAAGTCCTGTCTATGGCCAGTTAGGAAATCCCCAAGCTGATGGGAAGCTACCTACCCGCGTGGAAGGGAAACTGTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTCTAACTTTAAGGAATGAAGTTTACACCTGGGGGAAAGGTGCAAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAATAATCCAACACTAGTAGATGCTCTGAAAGACAAACATGTAAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCAGGCTGTCGTCTGCCATTCAATTTCAAAAGGAAACGTCACAACTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCCTCAATGGCTCCAAACCCCAACAAACCTTATCGTGTATGTGATGGTTGTTTTAATAAACTTAGGAAAGCTTTAGAAACTGATTCTTCATCTCATTCTTCCATTAGCAGAAGAGGAAGTATTAATCAGGGGTCTCTTGAGTTGATTGACAAGGATGAAAAATTGGATACCAGATCTCGTAATCAACTGGCCAGGTTTTCTTCGATGGAATCCTTTAAACAAGTGGAAAGCAAATCttcaaagaaaaacaagaaattggAGTTCAACAGTAGCCGTGTCTCTCCTGTTCCAAATGGGGGTTCACAATGGGGAGCGAatatttcaaaatcttttaatCCTGTTTTTGGATCGTCAAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGGCCTAGCCCACCTCGTTCAACTACTCCAACCCCAACACTGGGAGGTCTTACAACCCCAAAGATAATAGTTGTGGATGATGCTAAGAAGACTAATGATAGCCTCAGTCAAGAGGTTATTAAATTAAGATCACAGGTGGAAAGCCTGACTCGGAAAACCCAACTTCAAGAAATCGAGTTGGAAAGAACTTCTAAACAGCTAAAAGATGCAATAGCAATTGCTGGGGAAGAAACTGCCAGATGTAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCCGAGAGGCTACCTGTTGGAGCAGCTAAGAGTGTCAAATCACCTTCTCTTGCTTCTGTTGGTTCCAATGAACTTAGCTTTGCTTCTGTTGATCGATTAAATATTCAAGCAACAAGCCCAGAAGCCGATTTAACTGGATCAAATAACCTGTTACTTTCAAATGGATCAAGCACTGCCAGTAATCGCAGTACAGGACAGAATAAAAAAAGCCAGTCAGATACAGCTAATACAAATGGAAGCAGAACAAAGGATAGTGAATCCCGTAGTGAGACTGAATGGGTTGAGCAAGATGAACCCGGTGTATATATTACGCTAACCTCCCTACCAGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAGAAACAAGCAGAAAATTGGTGGGCCGAGAATCGCACAAGAGTATATGAACAATACAATGTACGCATGATTGACAAATCCAGTATTGGAGTTGGGAGTGAAGGACCTGGCTCATTGACATGA 3312 0.429 MEGFGMNSDLSRTGAVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLVWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEVNSPRTYTRRSSPLHSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKSFFPLDSASASVHSISSGGSDSMHGHMKTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVVGGGNHRVGSGLGVKIDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVESDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTMRASCGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALVEHNFCQVACGHSLTVALTTSGHVYAMGSPVYGQLGNPQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTLRNEVYTWGKGANGRLGHGDTDDRNNPTLVDALKDKHVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDGCFNKLRKALETDSSSHSSISRRGSINQGSLELIDKDEKLDTRSRNQLARFSSMESFKQVESKSSKKNKKLEFNSSRVSPVPNGGSQWGANISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIIVVDDAKKTNDSLSQEVIKLRSQVESLTRKTQLQEIELERTSKQLKDAIAIAGEETARCKAAKEVIKSLTAQLKDMAERLPVGAAKSVKSPSLASVGSNELSFASVDRLNIQATSPEADLTGSNNLLLSNGSSTASNRSTGQNKKSQSDTANTNGSRTKDSESRSETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAENWWAENRTRVYEQYNVRMIDKSSIGVGSEGPGSLT 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03653 1103 Gene3D - 18 136 IPR011993 -
Tsu05g03653 1103 ProSiteProfiles BRX domain profile. 1028 1083 IPR013591 -
Tsu05g03653 1103 Coils Coil 864 905 - -
Tsu05g03653 1103 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Tsu05g03653 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Tsu05g03653 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 603 650 IPR000408 -
Tsu05g03653 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 498 546 IPR000408 -
Tsu05g03653 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Tsu05g03653 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 379 431 IPR000408 -
Tsu05g03653 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Tsu05g03653 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 549 598 IPR000408 -
Tsu05g03653 1103 Gene3D - 496 665 IPR009091 -
Tsu05g03653 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 726 IPR013083 -
Tsu05g03653 1103 Coils Coil 920 940 - -
Tsu05g03653 1103 Pfam Transcription factor regulating root and shoot growth via Pin3 1027 1082 IPR013591 -
Tsu05g03653 1103 SUPERFAMILY FYVE/PHD zinc finger 654 725 IPR011011 -
Tsu05g03653 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 549 IPR000408 -
Tsu05g03653 1103 Pfam Transcription factor BRX N-terminal domain 915 948 IPR027988 -
Tsu05g03653 1103 SUPERFAMILY RCC1/BLIP-II 266 655 IPR009091 -
Tsu05g03653 1103 MobiDBLite consensus disorder prediction 831 858 - -
Tsu05g03653 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Tsu05g03653 1103 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 658 720 IPR017455 -
Tsu05g03653 1103 MobiDBLite consensus disorder prediction 787 802 - -
Tsu05g03653 1103 Gene3D - 216 389 IPR009091 -
Tsu05g03653 1103 Gene3D - 390 494 IPR009091 -
Tsu05g03653 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 602 653 IPR000408 -
Tsu05g03653 1103 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 20 1087 - -
Tsu05g03653 1103 Pfam FYVE zinc finger 654 720 IPR000306 GO:0046872
Tsu05g03653 1103 CDD FYVE_like_SF 663 716 - -
Tsu05g03653 1103 CDD PH_PLC_plant-like 18 128 - -
Tsu05g03653 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Tsu05g03653 1103 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 314 324 IPR000408 -
Tsu05g03653 1103 SUPERFAMILY PH domain-like 19 127 - -
Tsu05g03653 1103 MobiDBLite consensus disorder prediction 977 1032 - -
Tsu05g03653 1103 MobiDBLite consensus disorder prediction 142 172 - -
Tsu05g03653 1103 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Tsu05g03653 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 327 IPR000408 -
Tsu05g03653 1103 PRINTS Chromosome condensation regulator RCC1 signature 311 324 IPR000408 -
Tsu05g03653 1103 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Tsu05g03653 1103 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Tsu05g03653 1103 PRINTS Chromosome condensation regulator RCC1 signature 597 618 IPR000408 -
Tsu05g03653 1103 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Tsu05g03653 1103 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Tsu05g03653 1103 PRINTS Chromosome condensation regulator RCC1 signature 539 557 IPR000408 -
Tsu05g03653 1103 MobiDBLite consensus disorder prediction 977 1019 - -
Tsu05g03653 1103 MobiDBLite consensus disorder prediction 136 190 - -
Tsu05g03653 1103 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 1087 - -
Tsu05g03653 1103 SMART fyve_4 652 721 IPR000306 GO:0046872
Tsu05g03653 1103 Pfam Unstructured region between BRX_N and BRX domain 957 1021 - -
Tsu05g03653 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Tsu05g03653 1103 MobiDBLite consensus disorder prediction 766 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03653 Tsu-Chr5 47913913 47922279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03653 924 1092 Major Intrinsic Protein MIP AT1G31880 34.831 8.41e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03653 - - gmx:100802464 1913.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03653 05 47913913 47922279 Tsu05g03653 05 47913913 47922279 ECH
Tsu03g01516 03 14793344 14804294 Tsu05g03653 05 47913913 47922279 PCT