Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03652 ATGGAAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGCCTCCGCGGAGAAAAATCCAAAAAGAAAGCTCAAAACACCTGCACAGCTTAAGGGCTTggagaaattttatactgAACACAAATATCCGACAGAGGAATTGAAATTAGCGATTGCCGAGGAGTTAGAGTTGACAGAAAAGCAAGTATCTGGATGGTTTTGCCACCGAagattaaaagataaaagattgTTGAAAGAAGAAGCAAATGCTGCTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTCGGACAAGATTCTTGTGGAAGCAGTAAACATGGTGATTATAAGTATCTGGATCCTAAAGAGGTTGAGAGCCATGATCTCTACAATCGTGATTTGTCGGTTGCAGATATGACCTATGGACGTAGGAACCATTTTTCTGAAAATGTTAGTGGAATGGACGATACATCATCTGAGAGTAGCTCTTTTTTGCAAGATCGGTTGTATCCTCAAGGCCAAGATCCATATGAGACTGAGCCATCTAGATATCTAGCACATAGTAAAGCTCTTCCGCCCTTAAATCCCAAGGGTACAGTTAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAGCATGCTGCTATAACCGCTGTTAAGAAGCAATTAGGAAGGAACTATCGGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCCCTTCCTCCAGGGGCATTTGAATGCCAACCTGAAGATCCAGTTCATGAACCATACAGTATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATTTCCACAGTAAAAAGGCGGCCTGGTCTTAGCTCTAGATATGATTCGTATTATACTAAACATAGTTCCCAAGATAATCATATGGAAGGAGATGACTTTGGTTCCTTCCAAGACTCTGACATTCATGATAAACAAGATAAGAAAGCTTTCCATGGTACAAAACACAGACAAGCTTTTCAGAGTAATGCCGCTCGTTTTCCTGGAAGGAACTCTCCATTGGATTTGTATGAAGACTCTACCGGGGAAGCTGCTTATAATATCACTAAGAATCATAGGAAGGACATCAAGCGCGGTGTTGAGGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTATGAAGAAAACCTTGCAGTTAAACATGCAGACTTTGACTATGATAACATCAATCCAAAGAATGTCCAAAGGAGTGTTCCTGCAGACTATCTGCAACATGAGTATGATAAAATCAATCCAAAGAATGCGCAAAGGAGTGAACATGTAAAGTCTAAGCCTTCAAATTCAATCCGTAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGGCTATCTTCTAGGATGGCTAAGGAAGAGTTGTTTAAGGGGGACAAGAAGGCAAAAAAGCAATATCGTGACGCAAGTGGAGCAGGGATGCTTTCAAATGAAACTATGGTTGCAAAACGACTTAAAACCAATTCGTTTCAGCCATACATTATGAAACAATTGCCTGTTGCTGAGATAGAACCAAGGAAAAATCAAAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCTGATACCAGTTCCTCATTGGATTGA 1638 0.4066 MEESSELQPEENKASAEKNPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANAAANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESHDLYNRDLSVADMTYGRRNHFSENVSGMDDTSSESSSFLQDRLYPQGQDPYETEPSRYLAHSKALPPLNPKGTVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYREDGPLLGVEFDPLPPGAFECQPEDPVHEPYSIADPALLNSPEISTVKRRPGLSSRYDSYYTKHSSQDNHMEGDDFGSFQDSDIHDKQDKKAFHGTKHRQAFQSNAARFPGRNSPLDLYEDSTGEAAYNITKNHRKDIKRGVEGMRSDSASNHSDHYEENLAVKHADFDYDNINPKNVQRSVPADYLQHEYDKINPKNAQRSEHVKSKPSNSIRNSRGSVDTEERGLSSRMAKEELFKGDKKAKKQYRDASGAGMLSNETMVAKRLKTNSFQPYIMKQLPVAEIEPRKNQRSAAEMPSSFSEDETADTSSSLD 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03652 545 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 545 - -
Tsu05g03652 545 MobiDBLite consensus disorder prediction 514 545 - -
Tsu05g03652 545 MobiDBLite consensus disorder prediction 86 108 - -
Tsu05g03652 545 SMART HOX_1 18 80 IPR001356 GO:0003677
Tsu05g03652 545 MobiDBLite consensus disorder prediction 82 122 - -
Tsu05g03652 545 MobiDBLite consensus disorder prediction 7 28 - -
Tsu05g03652 545 CDD homeodomain 21 75 IPR001356 GO:0003677
Tsu05g03652 545 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Tsu05g03652 545 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Tsu05g03652 545 MobiDBLite consensus disorder prediction 1 28 - -
Tsu05g03652 545 Gene3D - 12 85 - -
Tsu05g03652 545 MobiDBLite consensus disorder prediction 296 315 - -
Tsu05g03652 545 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 545 - -
Tsu05g03652 545 MobiDBLite consensus disorder prediction 524 545 - -
Tsu05g03652 545 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Tsu05g03652 545 MobiDBLite consensus disorder prediction 425 442 - -
Tsu05g03652 545 MobiDBLite consensus disorder prediction 450 480 - -
Tsu05g03652 545 MobiDBLite consensus disorder prediction 425 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03652 Tsu-Chr5 47899178 47905162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03652 3 545 Homeobox Transcription Factor Family AT4G03250 39.858 8.76e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tsu05g03652 Homeodomain 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03652 - - gmx:100803515 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03652 05 47899178 47905162 Tsu05g03652 05 47899178 47905162 ECH
Tsu03g01520 03 14865434 14869775 Tsu05g03652 05 47899178 47905162 PCT