Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03649 ATGGGTATGTTTGTTGTAGCACCATCTCCTTATCATCCTCATCACCCTCATCATCATAGCCACCATGGTAGCCACCATGAAGCTATTATTTCCGATCCTCATTCTCTTAACCCCGCCACTGCTCTCGGTGTCGGGGTTATACCTTTACTTACTGCTTCTCCTCTTGACAATGAAAGACAACAAGGAATTCAGTTTTGgcatgaacaacaacaacagcatcaacatcattcaaattatttgaaaaaacacCAAGGTTTTCTTGATCATCATATTAATACTAGTCCAACAAATTTAGTTCATcacggtggtggtggtggtgcagGAGGAGGGTTAACTGGTTCTGGAACAAGTAGTGGTGGAGGAACAACTACATGTCAAGATTGTGGAAATCAAGCTAAGAAAGATTGTAGTAATAGAAGATGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAGAGTACTTGGGTACCTGCTGCTAGAAGAAGGGAACGTCTTGCTTCGGCGACGACGGGTGTTGCTGCTGGTGGTGGTTCTAGTGGTTCAACTTCTGGTGCTAAGAAACCTAGACTTATTGCTTCACAAACTACTTCTCATACTTCTACTTCTAATACTACTCCTCCTAGAAGTTTTGACACTACCTCTAGCCATCAAGATGCAGGTTTCAAAGAGTCAATGCCAGGTCAAGTACGTGCACCTGCAGTATTCAAGTGTGTTAGAGTAACATCAGTAGATGATGGAAAAGATGAATATGCATATCAAGCAGTAGTGAAAATTGGTGGCCATGTTTTCAAAGGTTTTCTTTATGATCATGGTGTTGAAAATAGAGAAGTTTATCCAAATCTTTCTGAACTTCATTTAGGAGGAGGAggtggtaataataataatggtggTGCTAATAGAAATGgagtttcatcatcatcaccaatgTTAGATCCTTCTCATGATGTTTATGCAGCAGCTTCAAGTGGTGTTGGAGGATTACTAGGAGGTTCAGCTTATGGTAATCAAATAAATTGA 1032 0.3556 MGMFVVAPSPYHPHHPHHHSHHGSHHEAIISDPHSLNPATALGVGVIPLLTASPLDNERQQGIQFWHEQQQQHQHHSNYLKKHQGFLDHHINTSPTNLVHHGGGGGAGGGLTGSGTSSGGGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLASATTGVAAGGGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQDAGFKESMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVENREVYPNLSELHLGGGGGNNNNGGANRNGVSSSSPMLDPSHDVYAAASSGVGGLLGGSAYGNQIN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03649 343 MobiDBLite consensus disorder prediction 103 122 - -
Tsu05g03649 343 Pfam Domain of unknown function (DUF702) 122 278 - -
Tsu05g03649 343 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 230 277 IPR006511 -
Tsu05g03649 343 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 124 166 IPR006510 -
Tsu05g03649 343 MobiDBLite consensus disorder prediction 172 230 - -
Tsu05g03649 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 343 IPR007818 GO:0003700|GO:0006355
Tsu05g03649 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 343 - -
Tsu05g03649 343 MobiDBLite consensus disorder prediction 177 226 - -
Tsu05g03649 343 MobiDBLite consensus disorder prediction 7 34 - -
Tsu05g03649 343 MobiDBLite consensus disorder prediction 294 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03649 Tsu-Chr5 47837254 47839625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03649 3 322 C2H2 Transcription Factor Family AT5G12330 50.893 3.22e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tsu05g03649 DUF702 4.6e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03649 - - gmx:100776306 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03649 05 47837254 47839625 Tsu05g03649 05 47837254 47839625 ECH