Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03646 ATGCCAACACCAGGCGTAGATCTTAACACATCCATCTCCAAAAGGCCCAGGGGTAGACCCCTAGGCTCTAAAAACAAGCCCAAACCACCTGTCGTAATCGAGGAAAACACGGAGACCCCCATGAAAATTGTTTTCCTGGAAGTACATGCTGGAGAAGATATTTTCGAGGCTTTAATGAATTTGGCTCATCATCATCAAGCTAGCTTAACGGTGTTGAGAGGTTCTGGACCTGTAACTAATGTTACACTCCTCCGACCACTGTCCCGTGCCCCAGCTTTCTCGATCGAAGGACCGTTTTATATGTCATCTCTATCTGGGATATACATAAATCCCAATTGTGGTCATATTCCTCCCCGATTCATGACTAATCCTAGGTGTTCCTCTTTTTCCATTTTCCTCTCCGGACGCTGTGGAAAGGTATTTTATGGAATTGTTGGAGGGACAATTAAGGCTGCTGGTGTTGTTTTGATTAAAGTTGTTCTTATGAAGAAACCCTACTTTCATAGGATTTTCAACTTCAATGGGCATATTCATGAAATTGAAGAGCGTGTTGAAGCTGaatccaacaacaacaatgtcATTAATGTTGGTGCTAATGTGAATGTCATGCAATGGAATTAG 621 0.4138 MPTPGVDLNTSISKRPRGRPLGSKNKPKPPVVIEENTETPMKIVFLEVHAGEDIFEALMNLAHHHQASLTVLRGSGPVTNVTLLRPLSRAPAFSIEGPFYMSSLSGIYINPNCGHIPPRFMTNPRCSSFSIFLSGRCGKVFYGIVGGTIKAAGVVLIKVVLMKKPYFHRIFNFNGHIHEIEERVEAESNNNNVINVGANVNVMQWN 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03646 206 ProSiteProfiles PPC domain profile profile. 38 183 IPR005175 -
Tsu05g03646 206 SUPERFAMILY AF0104/ALDC/Ptd012-like 40 174 - -
Tsu05g03646 206 Pfam Plants and Prokaryotes Conserved (PCC) domain 43 157 IPR005175 -
Tsu05g03646 206 MobiDBLite consensus disorder prediction 1 31 - -
Tsu05g03646 206 Gene3D - 41 189 - -
Tsu05g03646 206 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 198 - -
Tsu05g03646 206 CDD DUF296 46 157 IPR005175 -
Tsu05g03646 206 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 198 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03646 Tsu-Chr5 47818050 47818670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03646 3 170 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 38.372 7.86e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03646 - - cam:101509190 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03646 05 47818050 47818670 Tsu05g03646 05 47818050 47818670 ECH