Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03636 ATGGGCAATTGTTGCTCAGGTGGCACTGATGACCCTCAAGATAAGGGAGAAAACAATCAACCAAACAATGTAAATGGAGATTCGGCTACAACTCCGCCGCCATCATCAAAACCAGCCTCTAAATCATCAAAACCGCCCGTGATGGGTCCTGTTCTCGGCAGACCAATGGAAGATGTAAAGGCAACTTATAGCATGGGGAAGGAACTTGGAAGGGGACAATTTGGTGTAACACATTTATGCACACACAAAGCCACAGGAAAACAATATGCATGCAAAACTATTGCCAAGAGAAAGCTTGTTAACAAGGAAGATATCGAGGATGTTAGGAGGGAGGTTCAGATTATGCATCATCTCACAGGACAACCTAATATTGTGGAACTTCTTGGTGCTTATGAAGATAAACAATCTGTTCATTTGGTTATGGAGTTGTGTGCAGGTGGTGAACTATTCGATCGAATCATCGCTAAGGGTCATTATACCGAACGCGCTGCAGCTTCTTTGTTGAGAACCATTGTTCAAATTGTTCATACATGTCATTCCATGGGTGTTATTCATAGAGATCTTAAGCCTGAGAATTTCCTATTGTTGAGCAAGGATGAGAATGCTCCTCTGAAAGCCACCGATTTCGGTTTATCTGTCTTTTACAAGCAAGGAGAAACATTCAAAGATATTGTTGGAAGTGCATATTACATTGCACCTGAGGTGTTGAAGAGGAAATATGGACCAGAAGTCGATATTTGGAGTGTTGGTGTCATGTTATACATTCTTCTATGTGGTGTTCCACCATTTTGGGCAGAATCTGAAAATGGGATATTCAATGCCATCTTAAGAGGCCACGTTGACTTTTCGAGCGATCCATGGCCCTCGATTTCACCTGCAGCAAAAGATCTTGTACGGAAAATGTTGAATTCAGATCCTAAGCAGAGGCTAACAGCATATGAAGTTTTGAATCATCCTTGGATCAAGGAAGATGGAGAAGCACCAGATACACCTCTTGATAATGCAGTGCTCAATAGGCTCAAACAGTTTAGAGcaatgaatcaattcaagaaaGTTGCTCTAAAGGTTATTGCTGGCTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTTAGGGGTATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGACTTGCAAAACAAGGAACTAAACTGTCTGAACAAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGTAATGGAATCATAGACTACGACGAGTTCATCACAGCAACAATGGCCATGAACAGAATGAACAGAGAAGAACATGTTTACACTGCCTTCCAATACTTCGATAAAGATAACAGCGgGTACATCACCATTGAAGAATTAGAACAAGCTCTCCATGAGTATAACATGCATGATGGCAGGGACATCAAGGAAATCATTTCAGAAGTTGATGCAGATAATGATGGTCGGATTAACTACGATGAATTTGTTGCTATGATGAGCAAAGGAAACCCAGAAATAAATACCAAGAGGCGCAATTCAACCTTGTATTAG 1554 0.4086 MGNCCSGGTDDPQDKGENNQPNNVNGDSATTPPPSSKPASKSSKPPVMGPVLGRPMEDVKATYSMGKELGRGQFGVTHLCTHKATGKQYACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELLGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFYKQGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESENGIFNAILRGHVDFSSDPWPSISPAAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALKVIAGCLSEEEIMGLKQMFRGMDTDNSGTITIEELKQGLAKQGTKLSEQEVKQLMEAADADGNGIIDYDEFITATMAMNRMNREEHVYTAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIISEVDADNDGRINYDEFVAMMSKGNPEINTKRRNSTLY 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03636 517 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Tsu05g03636 517 ProSiteProfiles EF-hand calcium-binding domain profile. 475 506 IPR002048 GO:0005509
Tsu05g03636 517 SMART efh_1 475 503 IPR002048 GO:0005509
Tsu05g03636 517 SMART efh_1 404 432 IPR002048 GO:0005509
Tsu05g03636 517 SMART efh_1 440 468 IPR002048 GO:0005509
Tsu05g03636 517 SMART efh_1 368 396 IPR002048 GO:0005509
Tsu05g03636 517 SUPERFAMILY Protein kinase-like (PK-like) 42 348 IPR011009 -
Tsu05g03636 517 MobiDBLite consensus disorder prediction 12 37 - -
Tsu05g03636 517 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Tsu05g03636 517 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Tsu05g03636 517 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03636 517 Gene3D Transferase(Phosphotransferase) domain 1 149 328 - -
Tsu05g03636 517 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03636 517 Gene3D Phosphorylase Kinase; domain 1 65 148 - -
Tsu05g03636 517 Gene3D - 329 504 - -
Tsu05g03636 517 ProSitePatterns Protein kinases ATP-binding region signature. 69 96 IPR017441 GO:0005524
Tsu05g03636 517 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Tsu05g03636 517 SUPERFAMILY EF-hand 361 502 IPR011992 -
Tsu05g03636 517 Pfam Protein kinase domain 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03636 517 CDD STKc_CAMK 63 320 - -
Tsu05g03636 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 509 - -
Tsu05g03636 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Tsu05g03636 517 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 16 509 - -
Tsu05g03636 517 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Tsu05g03636 517 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Tsu05g03636 517 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Tsu05g03636 517 Pfam EF-hand domain pair 439 501 IPR002048 GO:0005509
Tsu05g03636 517 Pfam EF-hand domain pair 369 429 IPR002048 GO:0005509
Tsu05g03636 517 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03636 Tsu-Chr5 47704948 47707803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03636 1 512 EF-hand Containing Proteins AT5G12180 82.792 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu05g03636 Pkinase 5.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03636 K13412 - gmx:100820422 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03636 05 47704948 47707803 Tsu05g03636 05 47704948 47707803 ECH
Tsu03g01553 03 15373706 15376896 Tsu05g03636 05 47704948 47707803 PCT