Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu05g03635 | ATGACAACAATCAGTCTCCGGAAAGGAAACACACGACTCCCACCGGAAGTTAACCGCGTCCTCTACGTTCGTAACCTTCCATTCAACATCACCAGCGAAGAAATGTACGATATATTCGGCAAATACGGCGCAATTCGTCAGATCCGAATCGGAACAAACAAAGACACTCGCGGCACTGCTTTCGTCGTTTACGAAGATATCTACGACGCTAAAACCGCCGTCGATCATCTCTCTGGATTCAATGTTGCTAATCGGTATCTTATTGTTCTTTATTATCAACAAGCGAAGATGAGTAAGAAATTTgatcagaagaagaaggaagatgAAATTGCGAAGATGCAGGAGAAGTATGGTGTTTCTACTAAAGATAGCAAGTAG | 378 | 0.4048 | MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIAKMQEKYGVSTKDSK | 125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu05g03635 | 125 | SMART | rrm1_1 | 20 | 90 | IPR000504 | GO:0003723 | |
| Tsu05g03635 | 125 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 87 | IPR000504 | GO:0003723 | |
| Tsu05g03635 | 125 | PANTHER | SPLICING FACTOR 3B | 5 | 116 | - | - | |
| Tsu05g03635 | 125 | CDD | RRM_SF3B14 | 17 | 93 | IPR034150 | - | |
| Tsu05g03635 | 125 | SUPERFAMILY | RNA-binding domain, RBD | 7 | 102 | IPR035979 | GO:0003676 | |
| Tsu05g03635 | 125 | PANTHER | SPLICING FACTOR 3B SUBUNIT 6 | 5 | 116 | - | - | |
| Tsu05g03635 | 125 | Gene3D | - | 15 | 121 | IPR012677 | - | |
| Tsu05g03635 | 125 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 19 | 94 | IPR000504 | GO:0003723 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu05g03635 | 21 | 109 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 31.868 | 6.22e-07 | 45.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu05g03635 | K12833 | - | thj:104811201 | 244.973 |