Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03628 ATGGCTTTCACACTTGAGAGATGTGAAGATAACATGATGTTCACTATGGAATCTCAGAAGTCAGTTCCTGCTCCTTTCTTGACAAAGACATATCAACTTGTTGATGATCCTCTCACTGACCACATTGTATCTTGGAGTGATGATGAAACTACATTTGTTGTTTGGAGACCTCCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGGTTTCAAGAAGGTGGTTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAAAAAAGGATCTAAGCATCTATTATGTGAAATCCACAGAAGAAAAACCCCTCAACACTATCAACAACAATACTATGAACAACAATCACCACaaattcttcaacaagatcATGAAAGTATATGTTGGATTGATTCACCATTACCATCTCCAAAATCAAACACTGATATCTTAACAGCACTTTCTGAAGACAATCAAAgactaagaagaaaaaatttcatgCTCTTATCAGAACTCACTCACATGAAGAATCTTTACAATGATATTATatatttcattcaaaatcatGTGAGTCCTGCTacaccctttgaacaaagaagcAATAATAGTGCTATTTTGAAGCTTGTTGAATTGGATTCATCAGCATCTCAATTAGCAAATGATAATAATGTGGTTAAGGATAGTAATAGTTCTTATGTGAAACTTTTTGGTGTTCCTCTTTGTGGTAAAAAGAGAGTGCATCCAAGTAATCTTGATTAA 780 0.3167 MAFTLERCEDNMMFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGSKHLLCEIHRRKTPQHYQQQYYEQQSPQILQQDHESICWIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPATPFEQRSNNSAILKLVELDSSASQLANDNNVVKDSNSSYVKLFGVPLCGKKRVHPSNLD 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03628 259 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Tsu05g03628 259 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g03628 259 Gene3D - 18 117 IPR036388 -
Tsu05g03628 259 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g03628 259 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 252 IPR027725 -
Tsu05g03628 259 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g03628 259 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 13 252 - -
Tsu05g03628 259 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g03628 259 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g03628 259 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03628 Tsu-Chr5 47653485 47655263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03628 10 254 HSF AT1G46264 50.814 4.10e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu05g03628 HSF_DNA-bind 3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03628 K09419 - gmx:100527682 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03628 05 47653485 47655263 Tsu05g03628 05 47653485 47655263 ECH