Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03625 ATGAATGAATCCTTAGAGGACACTGTTGTAAGATCTTACACAAGTAACTCCTCTTTCATGGTGGGTGATAAGAGAGGATACATGGTCACAAACAATGACACATTGATGGTGCCAACACAATCACATGCATCACCCTCTTCTAATAGGGTTGTTGATCCCCCTCAAGATCCATCTAAGGATATTCTCACATCCTCCTCCAAAAAACCTAGGGGTAGACCCTTAGGCTCTAAGAATAGGCCTAAACCACCCCCCCACCACCTCATGGGAACTGCTTCCTTTGAAATCCCAGCAGGAATGGATATTGTGGGGATTTTAATCAACTATGCTCAACAACATAATGTAGGCATAACAGTGTTGAGTGCCTATGGCCCTATATCTAATGTCACCTTTCTCGATCCGGTATCTCTTACACCAAATTTGCCGATTGTAGGACCGTTCTATATGACATCTTTATATGGGACATATGTAAATCCCAATTGTCATAGTGTTTCTCCCAGATTCATCCCTAATCCAATATGTTCATGTTTTTCCATTTACCTTGCTAGCGATAAGGAAGATGTGTATGGTGGAATTGTTGGGGGACAAGTTATTGCTGCTGATGTTGTTTCAATTAAAACCACTTTTTTCAGGACAACTGATATCCATCGCGAAGTCTCTTCCAATAGTGATATCATCAACAATGTTGGTCCGGTTGCATCTCAACCTAATAACAACATTGTCGTTGATGTGCCAAACTTCAATGTCGTAGATGTCTATTCAACTCAGCCAAATCACCAAATGCCCCCTCATCATCTTCCTAGCGATGATAATGTGATGCAGTGGAACCATTCCACTCATACTAATGTGGTCCATCGGGAAGTCTCTGCTAATGGTGGTGTCATCAACAATGTTGGTCATGTTGCACCTCAAcctatcaacaacaacaacatagtCGTTGATGTGCCAAACTTCAATGTTGTAGATGTCGATTCAACTCGACCAAATCACCAAATGCCCCCTCACCATCTTCCTAATGATGATAATGTGATGCAGTGGAACCATTTCACTCACACTAATAGCTACTAG 1065 0.4103 MNESLEDTVVRSYTSNSSFMVGDKRGYMVTNNDTLMVPTQSHASPSSNRVVDPPQDPSKDILTSSSKKPRGRPLGSKNRPKPPPHHLMGTASFEIPAGMDIVGILINYAQQHNVGITVLSAYGPISNVTFLDPVSLTPNLPIVGPFYMTSLYGTYVNPNCHSVSPRFIPNPICSCFSIYLASDKEDVYGGIVGGQVIAADVVSIKTTFFRTTDIHREVSSNSDIINNVGPVASQPNNNIVVDVPNFNVVDVYSTQPNHQMPPHHLPSDDNVMQWNHSTHTNVVHREVSANGGVINNVGHVAPQPINNNNIVVDVPNFNVVDVDSTRPNHQMPPHHLPNDDNVMQWNHFTHTNSY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03625 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 204 IPR005175 -
Tsu05g03625 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 277 IPR014476 GO:0003680
Tsu05g03625 354 MobiDBLite consensus disorder prediction 37 89 - -
Tsu05g03625 354 Gene3D - 91 227 - -
Tsu05g03625 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 41 277 - -
Tsu05g03625 354 CDD DUF296 93 198 IPR005175 -
Tsu05g03625 354 ProSiteProfiles PPC domain profile profile. 85 231 IPR005175 -
Tsu05g03625 354 MobiDBLite consensus disorder prediction 37 64 - -
Tsu05g03625 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03625 Tsu-Chr5 47624633 47625697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03625 67 216 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.075 3.94e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03625 - - cam:101509190 209.534