Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03616 ATGGCTTCTAGAGCTATTGCTCCGATTGAACATAGAGGTGAGAATAATAATAAAGCAAAGAATGTCCTTGGGGTAGAAGGAGGAAGAAACAGAAGGGTTCTTCAAGATATTGGAAATCTTGTGATTAATCAAGCAGATCCTGCTGCTAATGCTAATGTGCCTAAGCGCATCACAAGGGCTCAATTAGCCGCCGCAGAGAAGACCAAGAAATCAATCCCTGAACTTGTCAATGTACCTAATGTTGCTGCAACAAAGGCTGTACAAGCTGTGAAGCCTGCAGAACCTGAAGTTATCGTCATCAGCTCCGATGATGAATCTGAAGTGAAGGAGAAACAAGCTGTTAATGGAAGAAAGTTAAGAGAAAGGTCCACAAAGAAAAATGCTAAGGCCTTTAGTTCTGTGCTTTCAGCTAGAAGCTGCAAgGCTGCTGGTAGAATTATGCCAAAGGATTTGGTTGAGAACATTGATGCAACTGATAAGGACAATGAATTGGCTGCAACCGAGTACATTGATGACATCTACCAGTATTACAAACTCTCTGAAGATGATGTCCGTGTACATGATTACATGGCTTCTCAGCCAGATATAAATGCTAAGATGAGATCTATCCTTGTTGATTGGTTGATTGAAGTGCATAGAAAGTTCGAACTTATGCCAGAAACTTTCTATCTGACTCTTAATATTGTCGACCGATTCTTGTCCACTAAGGCTGTACCTAGAAAGGAACTTCAGCTTGTTGGTATAAGCTCAATGCTTATAGCTTCCAAATATGAAGAGATTTGGGCACCAGAGGTTAGTGACTTTGTATGCATATCAGACAATGCATATGTTAGGGAACAAGTTCTGACTATGGAGAAAACAATCTTGAGAAAACTTGAATGGTATTTGACGGTTCCTACTCCTTATGTCTTTCTGGTTCGGTATATCAAAGCTTCAACTCCCTCTGATAAAGAGATGGAAAACATGGTGAATTTCCTAGCTGAGCTTTCTATGATGCATTATGCTACTGTCTCCACATATTGCCCTTCAATGATTGCTGCTTCCGCTGTTTATGCGGCAAGATCTACCCTTGAGAGGAGCCCCATTTGGACTGATACTCTGAAGCACTACACAGGCTACTCCGAGGAACAACTAAGGTAA 1140 0.4114 MASRAIAPIEHRGENNNKAKNVLGVEGGRNRRVLQDIGNLVINQADPAANANVPKRITRAQLAAAEKTKKSIPELVNVPNVAATKAVQAVKPAEPEVIVISSDDESEVKEKQAVNGRKLRERSTKKNAKAFSSVLSARSCKAAGRIMPKDLVENIDATDKDNELAATEYIDDIYQYYKLSEDDVRVHDYMASQPDINAKMRSILVDWLIEVHRKFELMPETFYLTLNIVDRFLSTKAVPRKELQLVGISSMLIASKYEEIWAPEVSDFVCISDNAYVREQVLTMEKTILRKLEWYLTVPTPYVFLVRYIKASTPSDKEMENMVNFLAELSMMHYATVSTYCPSMIAASAVYAARSTLERSPIWTDTLKHYTGYSEEQLR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03616 379 SUPERFAMILY Cyclin-like 298 378 IPR036915 -
Tsu05g03616 379 Gene3D - 186 297 - -
Tsu05g03616 379 Pfam Cyclin, C-terminal domain 299 379 IPR004367 -
Tsu05g03616 379 PIRSF Cyclin_A_B_D_E 2 379 IPR039361 -
Tsu05g03616 379 CDD CYCLIN 297 379 IPR013763 -
Tsu05g03616 379 PANTHER CYCLIN-B1-4 23 379 - -
Tsu05g03616 379 CDD CYCLIN 200 289 IPR013763 -
Tsu05g03616 379 SUPERFAMILY Cyclin-like 161 296 IPR036915 -
Tsu05g03616 379 SMART Cyclin_C_2 299 379 IPR004367 -
Tsu05g03616 379 SMART cyclin_7 206 290 IPR013763 -
Tsu05g03616 379 SMART cyclin_7 303 379 IPR013763 -
Tsu05g03616 379 Pfam Cyclin, N-terminal domain 172 296 IPR006671 -
Tsu05g03616 379 Gene3D - 172 378 - -
Tsu05g03616 379 ProSitePatterns Cyclins signature. 201 232 IPR006671 -
Tsu05g03616 379 PANTHER CYCLINS 23 379 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03616 Tsu-Chr5 47516587 47519535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03616 1 378 Core Cell Cycle Gene Families AT2G26760 51.316 1.12e-127 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03616 K21777 - gmx:547782 491.5