Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03608 ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAACGGATGAAGATGTTGGGAAGATTGCAATGGCTGTGCCTCTTCTAGTTTCAAAAGCACTAGAGCTATTTCTGCAAGATTTGTGCGATAGAACATATGAAATAACACTTAGGAGGGGAGCGAAGACCGTGAATGCTTTTCATTTAAAACAGTGTGTACAAACCTTTAATGTCTTTGATTTTCTAAACGATATTGTGAGCAAGGTTCCTGATTTAGGTAGTTCTGTCGCAACTGCTGACGACCAAATTGTCACGAAGAGGAGgaaaGTTGCTGAAGGTGATGATAATGACAGCGACGAGGAGACcaagaaaattaaaatgCTAGAACCTGCACAAACCGGTGGAAGAGGAAGGGGTAGAGGAAGAGGTAGGGGTCGTGGCCGTGGCCGTGGAAGTAAAACCGCAGATCAAGAGACCATTTCACATGTCAAGTTGGAAGATGACtctgatgtattgaagcaaaaCGGCAACCACATTCAAAGTAATGGAAGTCCCGAAAATGTGCAAGAACCCGAGGAAGTTAAGCATTGTTCACCAGTCAGAAAACCGGCTGAAGTGTTTGTTCGAAATTTCGATTTAAATATGGATCCGGATGATGACATGGATTTAATATCCGCACCAACTCCTATCGCAACTGGTTcatcttcaaaatcaatttcagAAGAGAAATCAGAAGAGAAAGTTGATGAATATCCTGGATGGTCCTTGTCTGATATGGAAAAAATGGCTATTGATCCTATTCAACTTGCCAACTTAAATAAAAGGATTGATGAAGATATGGAAGATTATGATGAAGAAGTGTAG 858 0.3881 MRKKLDTRFPAARIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCVQTFNVFDFLNDIVSKVPDLGSSVATADDQIVTKRRKVAEGDDNDSDEETKKIKMLEPAQTGGRGRGRGRGRGRGRGRGSKTADQETISHVKLEDDSDVLKQNGNHIQSNGSPENVQEPEEVKHCSPVRKPAEVFVRNFDLNMDPDDDMDLISAPTPIATGSSSKSISEEKSEEKVDEYPGWSLSDMEKMAIDPIQLANLNKRIDEDMEDYDEEV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03608 285 MobiDBLite consensus disorder prediction 237 252 - -
Tsu05g03608 285 PANTHER HISTONE SUPERFAMILY PROTEIN 1 284 - -
Tsu05g03608 285 MobiDBLite consensus disorder prediction 106 201 - -
Tsu05g03608 285 MobiDBLite consensus disorder prediction 147 171 - -
Tsu05g03608 285 MobiDBLite consensus disorder prediction 216 252 - -
Tsu05g03608 285 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Tsu05g03608 285 MobiDBLite consensus disorder prediction 106 125 - -
Tsu05g03608 285 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Tsu05g03608 285 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Tsu05g03608 285 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 284 - -
Tsu05g03608 285 MobiDBLite consensus disorder prediction 172 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03608 Tsu-Chr5 47469657 47472031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03608 1 274 CCAAT-HAP5 Transcription Factor Family AT3G12480 46.622 1.73e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu05g03608 CBFD_NFYB_HMF 2.8e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03608 K21752 - gmx:100814800 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03608 05 47469657 47472031 Tsu05g03608 05 47469657 47472031 ECH