Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03604 ATGGCTGTTACTTTCTCAGATCTACACACAGAGGAAGGTCTCAAATCCCTCAATGAATTCCTATCTGGAAAAACCTATATTTCTGGGGATCAATTGACAAAGGATGATATCAAAGTTTATGGAGCTGTTAGTGAAAAGCCAAGTGGTTCTTTTCCTAATGCTGCTACTTGGTATGATGCTGTCTCTTCAAAGCTTGCTGCTAGTTTCCCTGGAAAAGCTCAAGGTGTGAAATTCTCTGGAAGTGCTGCTTCAGCTGCAGCAGCACCTGCGGCTGCACCAGCtgctgaagatgatgatgatcttGACCTCTTCGGTGATGAAACAGAAGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTTCTAAGAAGCCtgccaagaagaaagaaaGTGGAAAATCTTCCATTCTGCTTGATGTTAAGCCTTGGGATGACGAGACTGACATGAAGAAGCTCGAAGAGGCTGTTCGCAGCGTTGAGATTGAAGGTTTAACCTGGGGAGCATCTAAGTTGGTTGCTGTCGGATACGGAATCAAGAAGTTGCAGATCATGTTGACCATCATCGATGATCTTGTATCTGTGGACGATCTCATTGAAGAAAAACTCACTGTTGAGCCAATTAACGAAGTTCTTGCTAATTCCTTTTTTGAAGAAAGAATGTCAAGTGGAGCAACACATTGGTGTTATGAATGCAATCGGCCAATTGTGCTTGAAGGGAGAGACGTCGTTTGCCCTTACTGTGACGATGGATTTGTACAAGAACTTGATGAGATGCGAGGCGTTGCACCCCAGAATACCCTTCCGTCACGCTCAGGAGAGCTTCATCAAATGCCTGACTTATTTGATGCTCTACATGCTTTTGTGGGTAACAGAGGTTCTGAAAACAGGTTTGGGCTTATGGACGCTGTTGATAATTTCATGAGGCATAGGATGGCTGGAATGCACCCAAACTTCGATGTTAGAGGGAGGACCAGTTCTTCTGTCCCAGTTCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTTTTTAGTATTTCATGGCCAAGTTCCTGGGTTAAACTTGCCTAATGGAAGCCCAAGAGGTGGTCCAAGGCGTGGTGATTTTGGCGACTACTTTATGGGTTCTGGACTTGAAGAGCTTATTGAACAACTCACCATGAATGATCGGCGTGGTCCTCCCCCAGCCGCACGATCTTCAATTGAAGCAATGCCTACTATTAGGATCACACAGGCGCATCTTCGCTCAGATTCACATTGTCCAGtttgtaaagaaaaatttgaacttgGTTCTGAAGCCAGAGAGATGCCATGTGACCATATTTACCATTCCGACTGTATTGTTCCTTGGTTGGTTGAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGCTGCCACCACACGGACAAGTTAGTTCTCGTGCAAGTAGTCGAAGCAACAACAGTGGAAATAGTAGCTCAAGGGGCAGGGAGAGTGACCGTCCAAACAATGGAAGGAGAAATCCATTTTCGTTTCTGTGGCCATTCCGTTCTTCTAGTTCGAACAATAATCAATATTCTGAGACTGGAGGAAGCAGCTCTTCAACCAATGCTGACCAGAATAACGGAACAAGTTATCATGGATGGCACTACGATAACTAA 1635 0.4379 MAVTFSDLHTEEGLKSLNEFLSGKTYISGDQLTKDDIKVYGAVSEKPSGSFPNAATWYDAVSSKLAASFPGKAQGVKFSGSAASAAAAPAAAPAAEDDDDLDLFGDETEEDKKAAEEREASKKPAKKKESGKSSILLDVKPWDDETDMKKLEEAVRSVEIEGLTWGASKLVAVGYGIKKLQIMLTIIDDLVSVDDLIEEKLTVEPINEVLANSFFEERMSSGATHWCYECNRPIVLEGRDVVCPYCDDGFVQELDEMRGVAPQNTLPSRSGELHQMPDLFDALHAFVGNRGSENRFGLMDAVDNFMRHRMAGMHPNFDVRGRTSSSVPVPEQSWGVYSSGPFLVFHGQVPGLNLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIEAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSDCIVPWLVEHNSCPVCRVELPPHGQVSSRASSRSNNSGNSSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSETGGSSSSTNADQNNGTSYHGWHYDN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03604 544 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Tsu05g03604 544 ProSiteProfiles Zinc finger RING-type profile. 419 460 IPR001841 -
Tsu05g03604 544 PANTHER OS03G0351800 PROTEIN 219 527 - -
Tsu05g03604 544 SMART ring_2 419 459 IPR001841 -
Tsu05g03604 544 Pfam Ring finger domain 418 460 IPR001841 -
Tsu05g03604 544 Gene3D - 125 214 IPR014717 -
Tsu05g03604 544 MobiDBLite consensus disorder prediction 466 544 - -
Tsu05g03604 544 Pfam zinc-ribbon 224 254 IPR039525 GO:0061630
Tsu05g03604 544 SUPERFAMILY RING/U-box 399 466 - -
Tsu05g03604 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 466 IPR013083 -
Tsu05g03604 544 MobiDBLite consensus disorder prediction 504 544 - -
Tsu05g03604 544 CDD RING-H2_RNF126_like 419 460 - -
Tsu05g03604 544 SUPERFAMILY eEF-1beta-like 129 208 IPR036219 -
Tsu05g03604 544 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 219 527 - -
Tsu05g03604 544 CDD EF1B 130 214 IPR014038 GO:0003746|GO:0006414
Tsu05g03604 544 Pfam EF-1 guanine nucleotide exchange domain 134 205 IPR014038 GO:0003746|GO:0006414
Tsu05g03604 544 SMART EF1_GNE_2 132 260 IPR014038 GO:0003746|GO:0006414
Tsu05g03604 544 MobiDBLite consensus disorder prediction 109 129 - -
Tsu05g03604 544 MobiDBLite consensus disorder prediction 468 489 - -
Tsu05g03604 544 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 97 105 IPR001326 GO:0003746|GO:0005853|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03604 Tsu-Chr5 47434296 47447710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03604 1 210 Eukaryotic Initiation Factors Gene Family AT5G12110 69.585 4.51e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03604 K11982 - gmx:100813674 526.168