Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03602 ATGTCATCATCTTCAGAGCAACAAAAAACCAATGATGGTGAtcataataatactaataatgtAACGTTGAAAAAAGGAACATGGTCAAAAGATGAGGATAAAATATTGGTAGATTATGTGAAAAAACAtggaaataaaaattggaatGCAATACAAAAGAGAACTGAACTTGCTCGAGATGGAAAAAGTTGTCGTCTAAGATGGAATAATCACTTAAAACCAGATGTGAGAAAGGGCAAATTTAGTGAACATGAACAAAAACTAGCCATTCGGATGAGAGAGCTTGGAATCGAATGGTGTAAAATAGCTAAACAGCTGCCAGGAAGATCAGATAATGATATAAAGAATTTCTGGAATGCAAGAGAAAGAAAACTCATGAATAAAAAGCTTAAATTGAGTGGTTCCAGCAGTTTAAGTGATGGTCATAAGTTGAATGACAATAGAAAGAATAGTTTGAGTGGTTCCACTAGCAAGCAAGTTGATGATTCAcaagtgaatattaaaaaacacaattatGATGAGATGAATGAAAACAACTACTCTAAACAACTTCCAAACTTATTTGATGATGTCCCAAATAAGCAGCTTCCAAAGTTGGTTGATGATTCAAATATGCTCTACAAAAATGTGGGAAGTGCTTCTATAAGCAATTATGCTACCCCATGGATTAATAGGGCTAGCATTGGAAATTCTTTTATGCATGGAGCCATGGTACCAAATCTATCAACATTCCCACCATATTCAGACTTTCAAAATATGTACAATCCACTTCCTTCAATTCAACACAATTATCCATCAAGATATGAtgagataaataaaaacaactCTCAACATATCTTGGTTGATGATTCAAATATGCTCTACAATTACAATAATCTGGGAAGTACTTCATCAATAAGTCAACATAATAGGGCTGGCATTGGAACTTCTTCTATGCATTTACCAAATCAAAATATGGACTATTCATTTCCTTCATTGGAACACAGTTTATATGGAAACAACTCTGAACTGCTTTCAAACTCATTCCAAGTCCCAAATCAGGAGCTTCCAATGTTGGTTGATGATTCAAATATGCTCAATAATAATGTGGGAAGTGCTTCTACAAGCAATCATACTACCTCAACATGGATTAATAGGGATGGCAATGGAACTTCTAGTAAACAATTTACCATGGTGCCAAATCAACTTCCGCTACATTCATTCGTTCAAAATATGGAATTTCAATTTCCTTCAGACGAGTATCTTCAAAATCCACTTCCAATACATTCATACGTTCAAAATATGGAATTTCAACTTCCTTCAGACGAGTATCTTCAAAATCCTCTTCCACCACCTAAGGAGGCTAACTGTCAGATGACAGAATCAGTTTCTCCATATAGAAGTGGTCCACAGGAGTCCATATTCTTTGCACATTTAAAAAAGATTATGGAAGACTCTGATGCTAGTCGCGTTTGTTCGTCTAAGGTAAATTTGGTTGATGAAAATGGGAAGAAGCCAATTTCTTTTGAGAATGATTCTGGAGCAAATCTCTGTAGCAATTTTACAGATTCATTTCTTCGCCCTGCCTCAAGTTTATTAGACAATGATGATAACAATAACTTGAATGACAAGCTTCCACACGATGTAAGGGATACGTCAGACTCAGCTATAAATGAAAAGGGCATAGATTGGTATCCTTTCCCTAGCTTTGGTTCATTAGACAAGGACGATAGCAATAACTTTCGTGACAAGCTTTCAGACGATGAAAAGGATACATTAGACGCAgctatattttacttttttcaatAG 1788 0.3389 MSSSSEQQKTNDGDHNNTNNVTLKKGTWSKDEDKILVDYVKKHGNKNWNAIQKRTELARDGKSCRLRWNNHLKPDVRKGKFSEHEQKLAIRMRELGIEWCKIAKQLPGRSDNDIKNFWNARERKLMNKKLKLSGSSSLSDGHKLNDNRKNSLSGSTSKQVDDSQVNIKKHNYDEMNENNYSKQLPNLFDDVPNKQLPKLVDDSNMLYKNVGSASISNYATPWINRASIGNSFMHGAMVPNLSTFPPYSDFQNMYNPLPSIQHNYPSRYDEINKNNSQHILVDDSNMLYNYNNLGSTSSISQHNRAGIGTSSMHLPNQNMDYSFPSLEHSLYGNNSELLSNSFQVPNQELPMLVDDSNMLNNNVGSASTSNHTTSTWINRDGNGTSSKQFTMVPNQLPLHSFVQNMEFQFPSDEYLQNPLPIHSYVQNMEFQLPSDEYLQNPLPPPKEANCQMTESVSPYRSGPQESIFFAHLKKIMEDSDASRVCSSKVNLVDENGKKPISFENDSGANLCSNFTDSFLRPASSLLDNDDNNNLNDKLPHDVRDTSDSAINEKGIDWYPFPSFGSLDKDDSNNFRDKLSDDEKDTLDAAIFYFFQ 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03602 595 MobiDBLite consensus disorder prediction 132 165 - -
Tsu05g03602 595 MobiDBLite consensus disorder prediction 1 25 - -
Tsu05g03602 595 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Tsu05g03602 595 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 329 - -
Tsu05g03602 595 Gene3D - 22 78 - -
Tsu05g03602 595 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Tsu05g03602 595 MobiDBLite consensus disorder prediction 148 162 - -
Tsu05g03602 595 Gene3D - 80 164 - -
Tsu05g03602 595 CDD SANT 27 72 IPR001005 -
Tsu05g03602 595 ProSiteProfiles Myb-like domain profile. 73 122 IPR001005 -
Tsu05g03602 595 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 126 IPR017930 -
Tsu05g03602 595 Pfam Myb-like DNA-binding domain 28 87 - -
Tsu05g03602 595 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 1 329 - -
Tsu05g03602 595 SMART sant 24 74 IPR001005 -
Tsu05g03602 595 SMART sant 77 124 IPR001005 -
Tsu05g03602 595 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03602 Tsu-Chr5 47424332 47427847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03602 11 132 MYB Transcription Factor Family AT3G11440 51.220 2.33e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03602 Myb_DNA-bind_6 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03602 K09422 - mtr:MTR_5g088610 185.652