Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03601 ATGAAATTACCtatagagaagaagaaaaatttagCTTCAACTTCTAATTCTTGTAAAGTTTATGATAAACCAAAGGGTAATCATCATCAAGAAGGATCAACAAGTTCAAAAATTCACAAGTGTGAATTTTGTAACAAAACTTTTGGTTGTGGAAAAGCATTAGGTGGTCACAAAAGATTTCATCTTCAACTTCTAAGAAAAGAGAATGAGGCTAAAACTAGGGTTAATAATTTTAACTCTTCTAATTATGATGGAAAACAAATATGTCATGTTTGTAAGAAGAATTTTCCATCTAATAAAGCTTTATATGGTCACATGAGATCTCACCCCGAAAGGGAATGGAGAGGTATTCACCCTAATAGGGCTAAAAGTTTTCATGAAAAACTTAATGAGAATTTGGATTATGAGGAAAAAGTGTTACCTAGTACTAGTGATCTTGTTGGTGACAATATTGatgaaacaaaattgaagaatgaTAGTAACAAAAAAAGGAAGATGTTGGTGAAATTGAAGAATCCATGGTTAGCTTCTAAAGAGAAGAATCTTAATAGGCATCAATGTGAGATTGGGGAATCAAGTCAATCAAAATCAAGAATTGTTCGAGCTTTTGATTTGAATGAGTGA 624 0.2981 MKLPIEKKKNLASTSNSCKVYDKPKGNHHQEGSTSSKIHKCEFCNKTFGCGKALGGHKRFHLQLLRKENEAKTRVNNFNSSNYDGKQICHVCKKNFPSNKALYGHMRSHPEREWRGIHPNRAKSFHEKLNENLDYEEKVLPSTSDLVGDNIDETKLKNDSNKKRKMLVKLKNPWLASKEKNLNRHQCEIGESSQSKSRIVRAFDLNE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03601 207 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tsu05g03601 207 SMART c2h2final6 39 61 IPR013087 -
Tsu05g03601 207 SMART c2h2final6 87 109 IPR013087 -
Tsu05g03601 207 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 23 133 IPR044653 GO:0003700
Tsu05g03601 207 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 23 133 - -
Tsu05g03601 207 Gene3D Classic Zinc Finger 32 117 - -
Tsu05g03601 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 61 IPR013087 -
Tsu05g03601 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Tsu05g03601 207 SUPERFAMILY beta-beta-alpha zinc fingers 88 112 IPR036236 -
Tsu05g03601 207 Pfam C2H2-type zinc finger 39 62 - -
Tsu05g03601 207 Pfam C2H2-type zinc finger 88 111 - -
Tsu05g03601 207 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Tsu05g03601 207 SUPERFAMILY beta-beta-alpha zinc fingers 34 62 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03601 39 119 C2H2 Transcription Factor Family AT2G26940 33.019 1.95e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g03601 zf-C2H2_6 3.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03601 - - mtr:MTR_5g098470 177.178