Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03595 ATGGAGGGATTTAAGAAAGGAAAGTGGTCTCTCGATGAAGATAACATCTTGAGAGCCTATATTGCTGATCATGGAGAAAAAAAGTGGTTTTCCATTCACAAGATGACATCCCTTCGGCGTTCAGGTGATAGTTGCCAAGAAAGGTGGATGAAAACTCTCCGACCCGGTTTGAAAAAAGGAGCTTTTACTGAAGAGGAAAAGAAGAGTGTTATGGAACTCCATAATCAATTAGGAGATAATTGGGCTGCAATTTCTCAGAAGGTTTCTACACTTATCCaactttttttactttaa 294 0.381 MEGFKKGKWSLDEDNILRAYIADHGEKKWFSIHKMTSLRRSGDSCQERWMKTLRPGLKKGAFTEEEKKSVMELHNQLGDNWAAISQKVSTLIQLFLL 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03595 97 SUPERFAMILY Homeodomain-like 4 88 IPR009057 -
Tsu05g03595 97 Pfam Myb-like DNA-binding domain 9 69 - -
Tsu05g03595 97 ProSiteProfiles Myb-like domain profile. 54 88 IPR001005 -
Tsu05g03595 97 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 3 87 - -
Tsu05g03595 97 CDD SANT 8 53 IPR001005 -
Tsu05g03595 97 Gene3D - 4 57 - -
Tsu05g03595 97 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Tsu05g03595 97 Gene3D - 58 90 - -
Tsu05g03595 97 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 3 87 - -
Tsu05g03595 97 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Tsu05g03595 97 SMART sant 58 94 IPR001005 -
Tsu05g03595 97 SMART sant 5 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03595 Tsu-Chr5 47389450 47389758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03595 2 88 MYB Transcription Factor Family AT2G26960 47.126 9.61e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03595 Myb_DNA-bind_6 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03595 K09422 - thj:104811615 100.138