Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03584 ATGGGGTTGCCTCCTAGATCAATGATTTTCCATCTCATCCTATCCATTGGTTATTGTTTCTATCTTGGCAGAGCCATTGATTGTGGTGGAACTCATATTGCAAATACCATTGTTGTTGATCAACATGGAAAAGGAGCATTCAACACGATTCAACCCGCCATTGATTCAATAAAGAATTACAATGATCAGTGGGTTAAGATTCACATAAATCCTGGAAAATATGTAGGACGTGTTAATATTCCCTATAACAAGCCATGCATCATTTTAGAAGGATCTAATAGAGGAAATACAATAATTAGTAGTggtgataaaaatattttagaaacaacAGCAACATTTGTTTCAATGGCACCTAATGTGATTTTGACTGGTATTACATTTGAGAACACATTTGGACATAGTGCACCAGCATTAGCTGCTAAAATAACTGGTGATAAAACAGCTATATTTAATTGTGGTTTCTTGGGTTATCAAGATActttatttgatgcaagtgggCGGCATTATTATAAGAATTGTTATATTCAAGGTGAAGTTGACTTCATTTTTGGCTTTGCCCAATCTTATTatgagAATTGTGTCATAAATGCTACACAAGATAGTTCTTTACCTCCAGGATATATCACAGCTCAATCTAGGAGATCACCAACTGATCAAGGTGGTTTTATTTTTAGAAGAGGGTTTGTTACTGGAAATGGTAAAGTGATGTTAGGAAGAGCTTATGGCCCTTACTCAAGAGTTATATTTTGGGGGACTGACCTTTCTTCTGTGGTACTTCCTCAAGGATGGGATGCTTGGACCTACAGAGGCCAAGAGTAA 819 0.3443 MGLPPRSMIFHLILSIGYCFYLGRAIDCGGTHIANTIVVDQHGKGAFNTIQPAIDSIKNYNDQWVKIHINPGKYVGRVNIPYNKPCIILEGSNRGNTIISSGDKNILETTATFVSMAPNVILTGITFENTFGHSAPALAAKITGDKTAIFNCGFLGYQDTLFDASGRHYYKNCYIQGEVDFIFGFAQSYYENCVINATQDSSLPPGYITAQSRRSPTDQGGFIFRRGFVTGNGKVMLGRAYGPYSRVIFWGTDLSSVVLPQGWDAWTYRGQE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03584 272 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 272 - -
Tsu05g03584 272 Pfam Pectinesterase 37 267 IPR000070 GO:0030599|GO:0042545
Tsu05g03584 272 Gene3D - 30 272 IPR012334 -
Tsu05g03584 272 SUPERFAMILY Pectin lyase-like 31 268 IPR011050 -
Tsu05g03584 272 PANTHER PECTINESTERASE 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03584 Tsu-Chr5 47296678 47298880 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03584 10 272 Carbohydrate Esterase AT2G19150 45.055 2.29e-72 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03584 - - mtr:MTR_5g088290 416.001