Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03582 ATGGGTTTGcttcctagatcaataattttCCATCTGATCCTATCCATCGGTTATTGTTTCTATCTTGGTAGAGCAATTGACTGTGGTGGAAATCATGTTGCAAATACCATTATTGTTGATCAACAAGGAAGAGGATCATTCAACATGATTCAACCTGCCATTGATTCAATAAAGAATAACAATGATCAATGGGTTAAGATTCACATAAATCCTGGAAAAtatgtGGGACATGTTAATATTCCCAATAACAAGCCGTGTATTATTTTAGAAGGATCTAATAGAGGAAATACAATAATTAGTTATGGCGATAGGGATGCATCAACATTTGTTTCAATGCCATCTAATGTGATTTTGAGTGGTATTACATTTGAGAACACATTTGGACATAATGCACCAGCATTAGCAGCTGCTATAAAGGGTGataaaacatttatatttaacTGTGGTTTTTTGGGTTATCAAGATACTTTATTTGATGGATATGGACgtcattattataagaaatGTTATATTCAAGGTGAAgttgacttcatttttggtTTTGCTCAATCTTATTatgagGATTGTATGATAAATGCAACACAAGAAAAATTTCCAGGTTATATCACAGCTCAACGTAGGAATTCAATAAATGAACCAActggttttgtttttaaaggTGGGAGAGTTGATGGAATTGGTAAAGTGAATTTAGGAAGAGCATGGGGTCCTTACTCAAGAGTTATATTTTGGGGAACATACCTTTCATCTGTGGTACTTCCAGGAGGATGGAATCCTTGGAAATATGTAGGCCATGAGGAGAAACTTAGTGACCACACTGGAGTTCGACGTGTTGGTTaa 840 0.319 MGLLPRSIIFHLILSIGYCFYLGRAIDCGGNHVANTIIVDQQGRGSFNMIQPAIDSIKNNNDQWVKIHINPGKYVGHVNIPNNKPCIILEGSNRGNTIISYGDRDASTFVSMPSNVILSGITFENTFGHNAPALAAAIKGDKTFIFNCGFLGYQDTLFDGYGRHYYKKCYIQGEVDFIFGFAQSYYEDCMINATQEKFPGYITAQRRNSINEPTGFVFKGGRVDGIGKVNLGRAWGPYSRVIFWGTYLSSVVLPGGWNPWKYVGHEEKLSDHTGVRRVG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03582 279 PANTHER PECTINESTERASE 1 269 - -
Tsu05g03582 279 Pfam Pectinesterase 37 261 IPR000070 GO:0030599|GO:0042545
Tsu05g03582 279 Gene3D - 30 273 IPR012334 -
Tsu05g03582 279 SUPERFAMILY Pectin lyase-like 33 262 IPR011050 -
Tsu05g03582 279 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03582 Tsu-Chr5 47279989 47290734 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03582 10 266 Carbohydrate Esterase AT2G19150 43.382 9.12e-66 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03582 - - mtr:MTR_5g088290 428.713