Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03576 ATGGCCAAGAAACGAAAGCTTCGATCCTCTGACCCCGAACCTACCAAACAAGTCGAACCCGAACCACAACAAGAAGAAGTTGCAGAAGAGCAACAACAAACCGACGAAGAACCAACCCAAAACATGGCCGTCGATGAACAAATCACTCCGATACAAGAAGGAGAAGAACAACAAGGAGAAGGCGAAGagcaagaacaagaacaagaagaagtagaagaagaagaagaggaggaagatgaacaacaagaggaagaaaccctagaaaatcaaCAGAATGATTCCGCCGCTGAAGTTCCGAATAACGCCGCCGCGTCGGAACAGGCTGAGACGACGACGGTGGAAGCTAACGGCGATGGGGAAGCGAACAATAACgaggaagaagaggaagatCTAGATTTGGAAGAAGAACCCGTTGAGAAGCTTCTAGAGCCTTTCACGAAGGAGCAATTACACGCTCTTGTGAAACAAGCGATTGAGAAGCATCCAGATCTAACGGAGAATGTTCGTCAGCTGGCTGATGTGGACCCAGCTCACCGGAAAATTTTTGTTCACGGCCTTGGATGGGACACTACCGCCGAAACCCTAACTAGCGTATTTTCAAAGTATGGCGAAATTGAGGATTGTAAGGCGGTGACCGATAAGGTTTCTGGAAAATCAAAGGGTTatgcttttattttgtttaagcaTAGGACCGGTTGTCGCAGGGCGTTAAAGCAGCCACAAAAGCAGATCGGCAATCGGACTACATCCTGTCAGTTGGCTTCTGCTGGACCTGTACCTGCGCCTCCCCCGAATGGGCCACCGGTTTCTGAATACACTCAAAGGAAGATTTTTGTAAGCAATGTCAGTTCTGATATTGATCCTCAGAAGCTGCTCGAGTTTTTCAAGCAGTTTGGTGAGGTTGATGATGGTCCTTTGGGTCTCGATAAGGCGACAGGGAGACCGAAGGGTTTTGCTCTTTTTGTTTACAAGTCTGTTGAGAGTGCTAAGAAGGCTTTAGAAGAGCCAAACAAGACTTTTGAGGGTCATACTCTGTATTGTCAAAAGGCTGTTGATGGTCCTAAGGGATACAAGGGTCATTATCAGCAGCAACAACATCACCAGTCGCATCACTCTCACCATCACCATCAGCCTCATTACAATCCGAGGAAAGAAAAgaagtattctcatggtggtgGTGGGCCATCACATGGTGGTCACTTGATGGCACCTGCAGGCCCTGCTGCTGGGGGTTACAATAATGCAGGAGTTCAGCCTCAGGGACCATTGAATCCAGTACTTGGACAGGCGTTATCAGCTTTGCTAGCGAACCAAGGAGCTGGTTTGGGGCTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCACAGGTGAATCAAGCTGGACCACCTCCTGCTTATGGTAATCAGGCTGCAATGGGGTATGGTCAGCCTGGGTTGCAGCCACAATACCAGAATCCTCAGATGGGGCAGACTGGTGGTGTCAGGCCTCATCCTGGTCCTGGTGGCGCTCCTTATATGAATCACTAG 1524 0.4501 MAKKRKLRSSDPEPTKQVEPEPQQEEVAEEQQQTDEEPTQNMAVDEQITPIQEGEEQQGEGEEQEQEQEEVEEEEEEEDEQQEEETLENQQNDSAAEVPNNAAASEQAETTTVEANGDGEANNNEEEEEDLDLEEEPVEKLLEPFTKEQLHALVKQAIEKHPDLTENVRQLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVSGKSKGYAFILFKHRTGCRRALKQPQKQIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGRPKGFALFVYKSVESAKKALEEPNKTFEGHTLYCQKAVDGPKGYKGHYQQQQHHQSHHSHHHHQPHYNPRKEKKYSHGGGGPSHGGHLMAPAGPAAGGYNNAGVQPQGPLNPVLGQALSALLANQGAGLGLGNLLGGLGGAQVNQAGPPPAYGNQAAMGYGQPGLQPQYQNPQMGQTGGVRPHPGPGGAPYMNH 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03576 507 MobiDBLite consensus disorder prediction 56 87 - -
Tsu05g03576 507 MobiDBLite consensus disorder prediction 88 119 - -
Tsu05g03576 507 Gene3D - 171 257 IPR012677 -
Tsu05g03576 507 CDD RRM_RBM24_RBM38_like 275 350 - -
Tsu05g03576 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 352 IPR000504 GO:0003723
Tsu05g03576 507 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g03576 507 MobiDBLite consensus disorder prediction 34 54 - -
Tsu05g03576 507 MobiDBLite consensus disorder prediction 244 271 - -
Tsu05g03576 507 CDD RRM_RBM24_RBM38_like 179 254 - -
Tsu05g03576 507 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 494 - -
Tsu05g03576 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 256 IPR000504 GO:0003723
Tsu05g03576 507 Coils Coil 54 93 - -
Tsu05g03576 507 Gene3D - 263 400 IPR012677 -
Tsu05g03576 507 SUPERFAMILY RNA-binding domain, RBD 168 260 IPR035979 GO:0003676
Tsu05g03576 507 SMART rrm1_1 276 348 IPR000504 GO:0003723
Tsu05g03576 507 SMART rrm1_1 180 252 IPR000504 GO:0003723
Tsu05g03576 507 MobiDBLite consensus disorder prediction 364 383 - -
Tsu05g03576 507 MobiDBLite consensus disorder prediction 120 135 - -
Tsu05g03576 507 SUPERFAMILY RNA-binding domain, RBD 259 369 IPR035979 GO:0003676
Tsu05g03576 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 345 IPR000504 GO:0003723
Tsu05g03576 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 248 IPR000504 GO:0003723
Tsu05g03576 507 MobiDBLite consensus disorder prediction 355 407 - -
Tsu05g03576 507 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 494 - -
Tsu05g03576 507 MobiDBLite consensus disorder prediction 482 507 - -
Tsu05g03576 507 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03576 Tsu-Chr5 47248671 47252451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03576 271 354 C2H2 Transcription Factor Family AT2G19380 30.952 3.77e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03576 K12741 - gmx:100792637 502.286