Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03566 ATGGGTTCCCAAGAGAATGAAGACTGTTTGCCCCCACCACCTCCCATCGTTCCTTCTGATGTTGAGCCAGTCAAAATTGTTGAACCATATGAGTATGTCAAACGAAAGATCCCTACTAAGGTTCCAATGGCTAGGCGTGGCCTAGGCTCAAAGGGAAATAAACTTCCTTTGCTGACCAATCATTTTAAAGTCAATGTGGAAAACACTGATGGACACTTCTTCCAGTACAGTGTGGCTTTATTTTATGAAGATGGACGCCCTGTTGAAGGCAAAGGTTCTGGTAGGAAGATACTTGACAGAGTTCAAGAGACTTACAATTCTGAGCTGAATGGAAAGGACATCGCCTATGACGGAGAAAAAACTCTGTTCACTATTGGCTCTTTAGCCCAGAACAAGCTTGAGTTTAAAGTTGTTCTTGATGATGTTGTATCAAACAGGAACAATGGAAACTGCAGCCCTGAAGCGAATGGAAGTCCGAATGAAGCTGATAGGAAGAGGGTTAAGAAATCCTACAGATCAAAGAGTTATAAAGTTGAAATCAGCTTTGCTTCTAAGATTCCTCTGCAGGCCATTGCCAATGCCTTGAAGGGACATGAAACAGAGAATTATCAAGAAGCCATCAGGGTTCTTGATATTATTCTGAGGCAACATGCTGCCAAACAAGGCTGTCTGCTGGTGCGACAAAATTTCTTCCACAATGATCCTAAGAATTTCACTGATGTTGGAGGTGGTGTACTTGGATGCAGAGGGCTGCATTCTAGCTTTAGAACCACACAAAGTGGGCTGTCTTTGAATATAGATGTGTCAACAACTATGATTGTCCGTCCTGGACCTGTTGTTGATTTCTTAATTGCAAATCAGAATGTTAGGGATCCCTTCAGCCTTGACTGGAATAAGGCTAAAAGAACTCTGAAGAATTTGAGGGTTACAGCCAGCCCATCCAACCAAGAGTACAAGATTACTGGGCTGAGTGAATTGCCCTGCAAAGACCAGCTGTTTACAATGAAGAAGAGAGGCGGCGCTGAAGATGAATCGGAAGAGATCACAGTTTACGATTATTTTGTTAACCGCCGGAAGATTCCTTTGCAGTACTCCGCTGAGCTTCCCTGCATCAATGTTGGAAAGCCTAAGCGCCCCACATATGTCCCAATTGAGCTCTGCTCATTGGTATCTCTTCAACGGTATACCAAAGCCCTTTCGACTCTTCAAAGGTCATCCCTTGTGGAAAAGTCAAGGCAGAAGCCTCAAGAACGGATGAAGGTCTTGTCTGATGCTTTGAGAACTAGCAACTATGGCTCTGAGCCCATGCTACGTAACTGTGGCATTTCAATCACATCTGGGTTCACACAAGTTGATGGGAGGGTTTTGCAGGCTCCAAGGTTGAAGTTTGGGAACGGAGAAGATTTCAATCCCAGAAATGGGAGATGGAATTTTAATAACAAGAAAATCGTGCAACCTGTTAAAATTGAGAAATGGGCTGTGGTTAACTTCTCTGCCCGTTGTGATGTGCGAGGACTTGTAAGAGATCTGATAAAATGTGGAGGAATGAAAGGAATCTTTGTGGAACAACCATTTGATGTATTTGAAGAAAATGGCCAGTTTAGGCGTGCGCCACCTTTGGTAAgagttgagaaaatgtttgattaTGCTCAGTCCAAACTTCCCGGTGCTCCGAAGTTTCTTCTTTGCCTGCTTCCCGAGAGGAAGAACTCTGATCTTTATGGTCCGTGGAAGAAGAAGTGTCTTGCTGATTTTGGAATTGTTACCCAGTGCATAGCTCCAACCAGGGTAAACGACCAGTATCTTACAAATGTTTTACTGAAGATAAATGCTAAGCTTGGTGGAATGAATTCTCTGTTGGGTGTTGAACATACTCCTTCCATCCCTattgtatctaaagctcccactcTCATTTTGGGCATGGATGTTTCTCATGGTTCACctgggcaaactgacattccttcGATTGCTGCGGTTGTAAGCTCGAGGCAATGGCCAATGATATCCAAATATAGGGCATGTGTCCGAACTCAGGGTGCGAAGGTTGAGATGATTGACAATTTGTTCAAGCCAGTGTCTGATACGGATGATGAAGGAATCATAAGGGAACTCTTGCTTGATTTCTATACAAGTTCTGGGAACAGAAAACCGGACAACATTATTATTTTCAGGGATGGTGTCAGTGAATCCCAGTTTAACCAAGTGTTGAACATTGAACTGAGCCAAATCATTGAGGCCTGCAAATTTCTGGATGAAACCTGGAACCCGAAGTTTTTGGTCATTGTTGCACAAAAGAATCATCACACAAAATTCTTCCAGCCTGGTTCCCCAGACAATGTGCCTCCTGGAACTGTTGTTGACAACAAAATTTGTCATCCTAGAAATTACGATTTCTATCTGTGTGCACATGCAGGAATGATTGGCACAAGCAGGCCAACACATTATCATGTTCTTTTGGATGAGATTGGCTTTTCTCCAGATGATTTACAGGAGCTTGTGCACTCACTTTCTTATGTTTATCAGCGGAGCACCACTGCTATTTCTGTTGTTGCTCCAATTTGCTATGCGCACTTGGCTGCTTCCCAGATTGGACAGTTCATGAAGTTTGAGGATAAGTCtgaaactaactctagccatgGTGGTAGTATCAATGCCTCCCCTGTCCCTCAGTTGCCCAAGTTAAATGAGATTGTCTGCAATTCTATGTTCTTTGTTTGA 2718 0.4202 MGSQENEDCLPPPPPIVPSDVEPVKIVEPYEYVKRKIPTKVPMARRGLGSKGNKLPLLTNHFKVNVENTDGHFFQYSVALFYEDGRPVEGKGSGRKILDRVQETYNSELNGKDIAYDGEKTLFTIGSLAQNKLEFKVVLDDVVSNRNNGNCSPEANGSPNEADRKRVKKSYRSKSYKVEISFASKIPLQAIANALKGHETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFTDVGGGVLGCRGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIANQNVRDPFSLDWNKAKRTLKNLRVTASPSNQEYKITGLSELPCKDQLFTMKKRGGAEDESEEITVYDYFVNRRKIPLQYSAELPCINVGKPKRPTYVPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLSDALRTSNYGSEPMLRNCGISITSGFTQVDGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPVKIEKWAVVNFSARCDVRGLVRDLIKCGGMKGIFVEQPFDVFEENGQFRRAPPLVRVEKMFDYAQSKLPGAPKFLLCLLPERKNSDLYGPWKKKCLADFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSLLGVEHTPSIPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPMISKYRACVRTQGAKVEMIDNLFKPVSDTDDEGIIRELLLDFYTSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQIIEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVVDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQIGQFMKFEDKSETNSSHGGSINASPVPQLPKLNEIVCNSMFFV 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03566 905 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 904 - -
Tsu05g03566 905 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g03566 905 Pfam Argonaute linker 1 domain 226 274 IPR014811 -
Tsu05g03566 905 CDD PAZ_argonaute_like 276 390 - -
Tsu05g03566 905 ProSiteProfiles Piwi domain profile. 560 868 IPR003165 GO:0003676
Tsu05g03566 905 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Tsu05g03566 905 SUPERFAMILY PAZ domain 271 431 IPR036085 GO:0005515
Tsu05g03566 905 Gene3D - 627 905 IPR036397 GO:0003676
Tsu05g03566 905 Pfam Argonaute linker 2 domain 417 463 IPR032472 -
Tsu05g03566 905 SMART Piwi_a_2 560 868 IPR003165 GO:0003676
Tsu05g03566 905 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 6 904 - -
Tsu05g03566 905 Gene3D - 455 621 - -
Tsu05g03566 905 CDD Piwi_ago-like 435 860 IPR045246 -
Tsu05g03566 905 ProSiteProfiles PAZ domain profile. 301 391 IPR003100 GO:0005515
Tsu05g03566 905 Pfam PAZ domain 280 407 IPR003100 GO:0005515
Tsu05g03566 905 SUPERFAMILY Ribonuclease H-like 544 866 IPR012337 -
Tsu05g03566 905 SMART DUF1785_2 224 276 IPR014811 -
Tsu05g03566 905 Pfam N-terminal domain of argonaute 55 214 IPR032474 -
Tsu05g03566 905 Gene3D paz domain 270 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03566 Tsu-Chr5 47192876 47200900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03566 45 904 Eukaryotic Initiation Factors Gene Family AT5G43810 34.850 1.84e-157 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03566 K11593 - gmx:100779439 1563.9