Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03558 ATGGAAGATCAACAAAAACAACCCATAAGATGTAAAGCTGCGGTTTGTCGCAAACCAGGTGAACCATTGATTATTGAGGAAATCTTTGTTGCTCCACCAATGCCACGTGAAGCTAGGATTCGTATTATTTGCACTTCTCTATGTCATAGCGATATCACTTTTTGGAACATGcagGGTCCTCCTGCAATTTTTCCAAGGATTTTGGGTCATGAAGCAATTGGGGTTGTGGAAAGTGTTGGAGAGGATGTAACAGAACTTACAAAAGGAGACACTGTTATCCCAATCTTCATGGCGGATTGTGAAGAATGTATAGATTGCAAATCAACAAAAAGCAACCTTTGTTCAAAGTTTCCTTTCAAGATTTCACCTTCGATGCTTAGATATGATACCAGTAGATTCACCGATCTAAACGGAGAGATCATACACCATTTCATATTTGTCTCTAGTTTTAGTGAGTACACTGTGGTCGACATTGCCAATCTACTCAAGATTGATCCTGCAATTCCTCCTAATAGGGCTTGCCTCCTCAGTTGTGGTGTATCAACAGGAGTAGGTGCTGCATGGAAAACAGCAAATGTGGAGCCAGGGTCTACAGTAGCTATTTTTGGACTGGGATGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATTGGTGTGGATATCAAGCcagaaaaatttgaaattgGAAAGAAGTTTGGAATCACAGACTTTGTGCATGCTGGAGAATGTGAAAACAAATCTGTTAGCCAGGTTATCATAGAGATGACTGGTGGTGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCATGTAGAAAGGTCTACTTCTATCTCTTTGTGCATAGTTTTCATTTGTACTTTTTTTAA 915 0.3956 MEDQQKQPIRCKAAVCRKPGEPLIIEEIFVAPPMPREARIRIICTSLCHSDITFWNMQGPPAIFPRILGHEAIGVVESVGEDVTELTKGDTVIPIFMADCEECIDCKSTKSNLCSKFPFKISPSMLRYDTSRFTDLNGEIIHHFIFVSSFSEYTVVDIANLLKIDPAIPPNRACLLSCGVSTGVGAAWKTANVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDIKPEKFEIGKKFGITDFVHAGECENKSVSQVIIEMTGGGADYCFECVGMASLVHEAYASCRKVYFYLFVHSFHLYFF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03558 304 Coils Coil 304 304 - -
Tsu05g03558 304 Pfam Zinc-binding dehydrogenase 207 289 IPR013149 -
Tsu05g03558 304 SUPERFAMILY GroES-like 5 191 IPR011032 -
Tsu05g03558 304 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 289 IPR036291 -
Tsu05g03558 304 Gene3D - 14 182 - -
Tsu05g03558 304 Gene3D - 183 290 - -
Tsu05g03558 304 PANTHER ALCOHOL DEHYDROGENASE 5 291 - -
Tsu05g03558 304 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Tsu05g03558 304 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 5 291 - -
Tsu05g03558 304 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03558 Tsu-Chr5 47093037 47096743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03558 36 178 Monolignol Biosynthesis Gene Families AT4G37970 27.397 1.93e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03558 K00121 - gmx:100806887 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02173 03 23271664 23275575 Tsu05g03558 05 47093037 47096743 PCT