Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03553 ATGGATGTTCATGTGATAACTATTGGAGAAGGAAGTGGAGCTATGGAAAATAATGGGCATGCTGAATTTGGTGAAGTTAATGATGTTGGAAAATCTGGATCTCATGCTGAGGATGTGGCTTCGGAACCGTATTTGGGTATGGCATTTGATTCTGAAGACTCTGcaaaaactttttataatgaGTATGCTAGACGTTCGGGTTTCAACACTAAAGCTGGCTTGCATGGTCAGTTTAATGCTGATGGGAAAAATATGTTTCGGGAGTTTGTGTGTAGCATGGAAGGTTTGAAAAGAAGGATGACTGAAAGTTGTGGGGCAATGGTTAGGATAGAGCAAAAGGGTCAAAATAAGTGGGTTGTTACAAAATTTGTGAAGGGACATAGTCATGCCACGGCGATTCCTGATAAGGTGGAAAAACTTAAACCACAGAAACACTTTTCTAGTGTTGGAAGAACCATGCCTGAAACTTATAAAGGAGTGGGGCTTGTTCCAACTGGTGTCATGTATATATCTATTGATGGGCATCATGTTTCCTCTGAGAATAGTCACAAGATTAGGAATTTTCCTGCAGTTGCTGCTGGTAAAACGAGTCATCCAGTTAAAAATTCCTCATCAGCGGCTTATACTGTGAGGAAACCTATTCAAAAGAAGACATTAGGGAGGGATGCTCCGAACCTGCTGGAGTATTTTAAGAAAGTGCAAGCTGAAAACCCCGGCTTCTTCTATGCAATACAACTTGATGAAGATAATCGTATGTCTAATGTGTTTTGGGCCGATGCAAGATCAAGGACAGCTTACAGTCATTTTGGTGATGCAGTTACCCTGGACACAACACATAGAGCAAATCAATATAATGTGCCATATGCTCCATTCACTGGGATAAACCATCATGGTCAGATGATTTTGTTTGGTTGTGCACTCCTTTTTGATGATTCTGAAGCTTCTTTTAGTTGGCTCTTCAAGACATTTCTTGCAGCAATGAACGACCATCACCCTATCTCTATAACTACAGATGAGGACAGATTCATACAAAAAGCAGTTTCAAAAGTTTTTCCTCAAGCACGTCACTGTATAAACAAGCGCTATGTCTTGCGAGAAGGCCACGAAAAGTTGGGCCATGTATGTCGCATGCATCCATATTTTCACTATGAACTTTATAATTGTATTAATTTGACAGAAACAATCGAGGAGTTTGATTTTTCTTGGAATTCTATCATCGATAAATATGAACTCAGAGGACATGATTGGCTTCGGTCCTTGTATAGTGCCCGTGATCAGTGGGTTCCAGCATATTTCCGTGATTCATTTTTCGCTGTACTATCTCCTAATCAAGGATTTGAAGCTTCTTTTTTAGATGGTTTTGTCAACCGGCATACAACATTACCAATGTTCTTTAGGCAGTATGAATTAGCTTTGGAGAGATGGTTTGAAAAGGAAATAGAATCAGATTTTGAGACAATTAGCACTACACCAGTTCTAAAGACACCTTCGCCAATGGAGAATCAGGTTGCTAAGCTTTATACGcagaaaatatttttgaagtttCAAGAAGAGCTAGTGGAAACTTTTGCTTATACTGCCAACAGAATCGAAGAGGATGGGGAAAATAGCATATTTAGAGTAGAAAAATTTGAGGATGACCAAAAGTCATATACTGTCACGTTAAACCATTCCGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTTTTCGGGCATTCTTTGTAGGCATGTTCTAACTGTTTTCACCGTGTCTAATGTATTCACTATACCATCCCACTACATCTTAAAACGGTGGACAAGGGAGGCAAAAAGCGGTGTTGCATTGGATGAATGTGGTGGTGACTCACATGCACACGAGTCTTTGACATCACGGTATACCAATCTGTGCCGGGAGGCCATCCGCTATGCTGAGGACGGAGCTGTAGCTATGGAAACTTATGATGCTGCAATGGGTGCTCTTAGAGACGGTGGAAAGAAAATTGCTGTCACGAAGAAAAATATTGCCAAAGTTTCACAAACAAATCATCGAGTCAGTGGGAATGCTGGCGATGACAAGAAAACCCATGCCTCAACATCAGACACAAGTACAGCCCCTTTTTTATGGCCACCTAACGATGAAACAACGGGGTTTAATCTTAATGATGCCGGTGCTCCAGTTCAACCAGTTGCTGATCTAAATTTACCACAAACGACCCCGACGCCACATAAGCGAGTTGATGTTCCAACCCCAGTTCATCGTCAGCGAGTTGATAGTCCATCTCCAGTGCGTCATCAGCGAGATGATGGTCCACGGCCAGTGCCTCGTAGGCGAGTTGATGGTCCATCCCCAATGCCTCGTCAGCGAGATGATAGTCCACCCCTAGTGCCTCTTCAGCAAGACGATGGTCCACCTGAAAACACGGTGGTTCTTCCATGTCTGAAGTCAATGACATGGGTAATGGAGAACAAAACCTCATCCCCAGAGACCAAAGTAGCTGTTATCAATCTCAAGTTACAAGATTATAGCAAGATTCCATCATCAGAATATGAGGTTAAGTTCCATCTCTCTCGAGGGACTGTGGGACCTGTTTTGCAGTCTATGGCCGAAGTCAGCGAACAACTTTCAACCACAGCTAATAAGGTTGCTGTGATAAACCTCAAGCTTGAGGATGCCCAGGCTTCTGGTGAGTCTGAAGTTAAGTTTCAAGTGTCCAGGGATGCATTGGGTGCTGTGCTACGATCAATGGCTTATATCCGCGAGCAACTTTCTGGTGCTGGAGACGTGCACTCAGAACCTGTGTCGAAAAAGCAACGAAAGTGA 2805 0.4221 MDVHVITIGEGSGAMENNGHAEFGEVNDVGKSGSHAEDVASEPYLGMAFDSEDSAKTFYNEYARRSGFNTKAGLHGQFNADGKNMFREFVCSMEGLKRRMTESCGAMVRIEQKGQNKWVVTKFVKGHSHATAIPDKVEKLKPQKHFSSVGRTMPETYKGVGLVPTGVMYISIDGHHVSSENSHKIRNFPAVAAGKTSHPVKNSSSAAYTVRKPIQKKTLGRDAPNLLEYFKKVQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSHFGDAVTLDTTHRANQYNVPYAPFTGINHHGQMILFGCALLFDDSEASFSWLFKTFLAAMNDHHPISITTDEDRFIQKAVSKVFPQARHCINKRYVLREGHEKLGHVCRMHPYFHYELYNCINLTETIEEFDFSWNSIIDKYELRGHDWLRSLYSARDQWVPAYFRDSFFAVLSPNQGFEASFLDGFVNRHTTLPMFFRQYELALERWFEKEIESDFETISTTPVLKTPSPMENQVAKLYTQKIFLKFQEELVETFAYTANRIEEDGENSIFRVEKFEDDQKSYTVTLNHSELRANCSCQMFEFSGILCRHVLTVFTVSNVFTIPSHYILKRWTREAKSGVALDECGGDSHAHESLTSRYTNLCREAIRYAEDGAVAMETYDAAMGALRDGGKKIAVTKKNIAKVSQTNHRVSGNAGDDKKTHASTSDTSTAPFLWPPNDETTGFNLNDAGAPVQPVADLNLPQTTPTPHKRVDVPTPVHRQRVDSPSPVRHQRDDGPRPVPRRRVDGPSPMPRQRDDSPPLVPLQQDDGPPENTVVLPCLKSMTWVMENKTSSPETKVAVINLKLQDYSKIPSSEYEVKFHLSRGTVGPVLQSMAEVSEQLSTTANKVAVINLKLEDAQASGESEVKFQVSRDALGAVLRSMAYIREQLSGAGDVHSEPVSKKQRK 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03553 934 MobiDBLite consensus disorder prediction 741 770 - -
Tsu05g03553 934 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 786 862 - -
Tsu05g03553 934 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 31 736 - -
Tsu05g03553 934 MobiDBLite consensus disorder prediction 673 800 - -
Tsu05g03553 934 Pfam MULE transposase domain 273 358 IPR018289 -
Tsu05g03553 934 ProSiteProfiles Zinc finger SWIM-type profile. 551 587 IPR007527 GO:0008270
Tsu05g03553 934 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 736 IPR031052 GO:0006355
Tsu05g03553 934 Pfam FAR1 DNA-binding domain 57 130 IPR004330 -
Tsu05g03553 934 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 786 862 IPR031052 GO:0006355
Tsu05g03553 934 MobiDBLite consensus disorder prediction 693 716 - -
Tsu05g03553 934 SMART 26again6 562 589 IPR006564 GO:0008270
Tsu05g03553 934 Pfam SWIM zinc finger 551 584 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03553 Tsu-Chr5 47039371 47045159 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu05g03553 MULE 3.8e-19 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03553 - - gmx:100786516 1212.21