Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03525 ATGACTTATAGAACTAGTTTTAGCAGTAGAGTTGTTACAATCTTGTTGTTGAGTGTTTCTTTCTTGCATGGTGCTACTACTCTTACATCTGATGGGTTGACTATGCTGTCACTCTTGACACAATGGACTTCTGTACCTACCCTCATCAGGTCAAGCTGGAAGGCTTCTGATTCCAATCCATGCTCATGGGTTGGTGTTCAATGTGACCATACCCACAATGTCATTTCCATTAACCTAACTCATGGTGGGATTTCTGGTCAACTTGGACATGAAATTGGAAACCTTTATCATTTGCAGACCCTTGTGCTGTTACGCAATGGTTTCTCAGGGACTATTCCTTCATCTCTTGGTAATTGCAGCAAACTAGAGGACCTTGAATTGTCTTACAACCGTTTGAGTGGTGAAATTCCGAACAGTATTTGGAGAATTCCAAGTCTTGTGAACATATTGGTTAACAACAACAGCCTCTCTGGGGAACTACCCTTCGAGATGACAAACCTCAAGTTTCTGAAAAATATCTCATTGTTTGATAATCAGTTCTCAGGAGTCATACCTCAAAGCTTGGGAATCAACAGCAGCATAGTGCTGTTGGACTGTACGAATAACAAGTTCAGTGGTAATATCCCGCCAAATCTTTGCTTTGGAAAGAATTTGCGTGAGCTCAATATGGGAAGCAATCGACTTCAAGGTGTCATACCTTCTGATATAGGAAGTTGTGAAACTCTAAGGAGGTTGATTCTCAATGAGAATAATTTCAGTGGCACTCTTCCTGATTTTGAAAGGAATCTGAACCTGAAATACATGGACATAAGCAAGAACAATATCAGTGGACCAATTCCATCAAGTTTGGGAAATTGCACAAATCTCACATACATTAATTTGTCACGGAACAAGTTTGCAGGGCTAATACCATCATATCTTGGAAATCTTGTGAATCTTGTGATTTTGGATCTTGCTCACAACAAGTTGGAAGGTCCTTTTCCACTTCAGCTGTCAAATTGTACTAAAATGGATCGTCTTGATGTGGGATACAATTTCCTAAATGGCTCATTCCCTTCAAGTTTGAGAAGTTGGACAAACATAACCACATTGGTATTAACTGAAAATCACTTCACTGGAGGTATACCAGCGTTTTTGGAAGCATTTGGTAACCTTCGCGAGTTACAACTTAGTAGAAATTTGTTTGGAGGCAAAATTCCTCGATCGATAGGAATGTTGCATAATCTGTTCTATGCATTGAATCTGAGTGCTAATGGATTGATAGGCGATATTCCTTCAGAAATTGGGAAGCTAGGAATGCTGCAAAGTCTGGACATATCCTTCAACAATTTAACAGGAAGCATAGATGCTCTTGAAAATCTCATTTCATTAACTGAGGTCAATATTTCTTACAATCTCTTCAATGGTTTTGTACCAGAAAGAACAATTCTAGAAAAGCTATTTAATTTGTCTCCTTCATCATTCTTGGGCAATCCTTTCCTATGTTTTACATTGTGTCGCACTCATACTGATAATTTGAATCCATCAGACAAAGTTAGTAAATTTCGAATTGTGATGATGGAACTTGGATCCTCAATTGTTATTTCTGTCATCTTGGTAATAATAATTCGAAGGTATCTCCGTAGAAAGGAATCGAAAAGGGCATCTGATCTTAATCAAATGTTTTTTAATGTAAGAGGTGAAGAAAGTTTTGAATTCACACATGACAGtgattacaaaataaatatctCAACTGAAAAGGAGATGTCTTCCCTTCAAGATCAAGTGTTGGAGGCTACAGAGAACCTAAAGGATGAGTATATTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCCATAATAGGTCAACAGGTTTGTGCAGTAAAGAAGCTTGAATTTGGACGCAACAAGAAAAAGCGGTTAAGTATCACGTGCAACGAAATTAAAGTCCTTAGGACCATTAAGCATCGAAATTTGATCAAATATGTTGACTACTGGATTGGAAAGGACTATGGTTTAGTCTTATATGAATTCATGGAAAATGGAAGTCTTTATGAAATTTTGCATGAAAAGAAACCTGCGCCACCCTTAATATGGAATGTTCGGTGTAAGATAGCAGTTGGAATTGCTCAAGGACTAGCTTATCTTCATTACGATTGTATTCCACCAATAGTGCACCGAGACATCAAACCAAAGAACATACTTCTTGACAATAATATGGAGCCTGTTATAGCTGATTTTGGTACTGCCCTATGCAAGAAGCTGCTAGAGGATTCTAATAGTTATTCTGAATCCAGGAAAATGCTTTCGTCGCACGTTGTAGGTACCCCTGGCTATATTGCACCGGAGAATGCATATGATATAGTGCCTGGAAGAAAGTCTGATGTATATAGCTATGGAGTTGTTTTGCTCGAGCTAATAACTAGAAAGAAATTATTAGTTGCATCTATAAATGATGAGGTAAATGAGATCCACATAGTGACCTGGGCTAGATCTGTAATGATGGAAACAGGCAAGATTGAGAATATTGTTGATCCGTACCTTGTAAGTGCATTTCCCAATTCAATAGCACTAACCATGCAAGTCACTGCAGTGCTTTCATTGGCATTACAATGCACAGAGAAGGATCCACAAAAGAGGCCGACCATGAAAGGTGTTATTGACTTTTATAGCAAGAACTTGTTTAATCTGAGGTGTGATGAGGTTCAATATGGTGGTGATGGACTTGTAATTAAATCAATGGGAAATGGTAAGATTCGGTCTGAAAAGGTTTTCAGCGTTGCGAATTTAGTTTCTCCAAAAATAACCTATGTTTGGTCTAGTTTGATCTTTCTTCCCTCTATCACTGGTCCAATACTTAACAAACCTTTCAACTGGTTTTTTCTTTCACGTTGGGGTCAATATAGACAACTGCAGAAATCCTTGTATTCACAGCCCAAATCATACTATTCTATAAACACCAATCAAACTGAGGCCACTCTCCAAATTAGTGAATAG 2979 0.3807 MTYRTSFSSRVVTILLLSVSFLHGATTLTSDGLTMLSLLTQWTSVPTLIRSSWKASDSNPCSWVGVQCDHTHNVISINLTHGGISGQLGHEIGNLYHLQTLVLLRNGFSGTIPSSLGNCSKLEDLELSYNRLSGEIPNSIWRIPSLVNILVNNNSLSGELPFEMTNLKFLKNISLFDNQFSGVIPQSLGINSSIVLLDCTNNKFSGNIPPNLCFGKNLRELNMGSNRLQGVIPSDIGSCETLRRLILNENNFSGTLPDFERNLNLKYMDISKNNISGPIPSSLGNCTNLTYINLSRNKFAGLIPSYLGNLVNLVILDLAHNKLEGPFPLQLSNCTKMDRLDVGYNFLNGSFPSSLRSWTNITTLVLTENHFTGGIPAFLEAFGNLRELQLSRNLFGGKIPRSIGMLHNLFYALNLSANGLIGDIPSEIGKLGMLQSLDISFNNLTGSIDALENLISLTEVNISYNLFNGFVPERTILEKLFNLSPSSFLGNPFLCFTLCRTHTDNLNPSDKVSKFRIVMMELGSSIVISVILVIIIRRYLRRKESKRASDLNQMFFNVRGEESFEFTHDSDYKINISTEKEMSSLQDQVLEATENLKDEYIIGRGAHGIVYKAIIGQQVCAVKKLEFGRNKKKRLSITCNEIKVLRTIKHRNLIKYVDYWIGKDYGLVLYEFMENGSLYEILHEKKPAPPLIWNVRCKIAVGIAQGLAYLHYDCIPPIVHRDIKPKNILLDNNMEPVIADFGTALCKKLLEDSNSYSESRKMLSSHVVGTPGYIAPENAYDIVPGRKSDVYSYGVVLLELITRKKLLVASINDEVNEIHIVTWARSVMMETGKIENIVDPYLVSAFPNSIALTMQVTAVLSLALQCTEKDPQKRPTMKGVIDFYSKNLFNLRCDEVQYGGDGLVIKSMGNGKIRSEKVFSVANLVSPKITYVWSSLIFLPSITGPILNKPFNWFFLSRWGQYRQLQKSLYSQPKSYYSINTNQTEATLQISE 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03525 992 SUPERFAMILY L domain-like 31 259 - -
Tsu05g03525 992 SUPERFAMILY L domain-like 193 499 - -
Tsu05g03525 992 SUPERFAMILY Protein kinase-like (PK-like) 583 882 IPR011009 -
Tsu05g03525 992 SMART serkin_6 596 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03525 992 Coils Coil 575 595 - -
Tsu05g03525 992 ProSiteProfiles Leucine-rich repeat profile. 433 455 IPR001611 GO:0005515
Tsu05g03525 992 PANTHER OS08G0446200 PROTEIN 8 139 - -
Tsu05g03525 992 ProSiteProfiles Protein kinase domain profile. 596 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03525 992 Pfam Protein kinase domain 599 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03525 992 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Tsu05g03525 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Tsu05g03525 992 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Tsu05g03525 992 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 120 894 - -
Tsu05g03525 992 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 139 - -
Tsu05g03525 992 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Tsu05g03525 992 Gene3D Ribonuclease Inhibitor 192 262 IPR032675 -
Tsu05g03525 992 Gene3D Ribonuclease Inhibitor 263 506 IPR032675 -
Tsu05g03525 992 PANTHER OS08G0446200 PROTEIN 120 894 - -
Tsu05g03525 992 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Tsu05g03525 992 Gene3D Phosphorylase Kinase; domain 1 575 672 - -
Tsu05g03525 992 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Tsu05g03525 992 Pfam Leucine rich repeat 264 323 IPR001611 GO:0005515
Tsu05g03525 992 Gene3D Transferase(Phosphotransferase) domain 1 673 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03525 Tsu-Chr5 46817946 46821526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03525 73 881 Receptor kinase-like Gene Family AT1G73080 46.618 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu05g03525 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03525 - - mtr:MTR_5g087340 1234.94