Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03508 ATGTCGGATGACATGCTTGTGCATTTTTCGTCGAATTCTTCTAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCTAAGCTGGAAGCTCGAATGGTTGGAAAAGGTTCTTCCTCTGCTTCTCAGCAACAAGGTTggtcttctgtttcttcagctGGGAAATTCAGTGGAGCAGTTGAAGATTTGGTTGAACCTTGTACTTCAagtgattctgatgatgatAATGGCGGGGAGTTCTTGATTCAAGCCAACACGCGTAAGCGCCCAAAACCTGAAAATGATACTGCCGATGTTTTTGAACGTGCCGAGGCTGTTACTGATGGAAGACAGACTAGTTTGGAGGCCGTGGAGACAAAAAATAATGCCGAAGCAAGTAGAAAGAGATCTGGTCGTGGAAGAGGGAGTTCTGGCTCAGGTAGGGGTCGTGGATCCAAAAGTAATGATCAAACCAGATCACAAATTTCTCCCCCAACAGTTTCTGCTTCAAATGGTCAGAATGAGAATGTATTGCATAAAGATGGTAGAATCAAAGATCAGGTTCATAATGATAATAGTGCTTCATTAGAGGAGGAGGTTTCATCTTTACGTGCAAGAATTGTCGTCTTGGAGGAAGATTTGCGTAAAGCAAAGCTAGAAACCTCCGAGAATCAGAATGCTCGTCAGCAGTTGGAAATGGAACTGAAGGAACTGAAAGCTCTTGAACAACAAATGAAGCCTAAGagaacaaaaataatatCTGATTTGCTGATATCAGTTTCAAAGGCTGAGAGACAAGAAGCAAGGCTAAAAGTACGACAAGACTCATTGAGGCTTGGAAATGTTGGTGTAATCAGAGCTGGTACTATCATATCGGAGACTTGGGAAGATGGTCCGGCGTTAAAGGATCTTAATGCCCAGCTTAAACAACTAATAGAATCAAAAGAGGCAATTGAGCGCCAGCGGAAGCTATTCAAGAAAAAACAATCTGATAAGGGTGATGGAATAGAGGCAGAGGCTGGAATGTTGGAAATGCACGAGGAAATCTATAAGTGTCGACTAGCCAGCATTAAACGGGAAGAAGAAATTGTTCTGCGAGAGAGGGACCGCTACGAACTAGAGAAGGGAAGACTAATTCGTGAAATGAAACGCATACGGGATGAAGATGGTTCACGGTTCAACAACTTTCAGATTTTAAACCATCGTTATGCCCTTCTAAACCTTCTCGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCCTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCACTTCGAGAGTATAATATTCACAAGACATTGGTTCACCCTCACATTGTTCGCTTATGGGACATCTTTGAGATTGATACGAATACATTCTGCACTGTTCTAGAGTATTGTAGTGGGAAAGATCTTGATGCTGTTCTTAAAGCAACGCCTACATTGCCCGAGAGGGAGGCTAGGGTCATTTTAACTCAGATTTTCCAAGGCCTTATTTACATGAATAAAAGAACACTGAAGATTATTCATTATGATTTAAAACCTGGAAATGTCTTGTTTGATGAACTTGCGATTGCTAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGGATGATGTGGGATCTCAGGGTATGGAACTTACATCCCAGGGTGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAACAAGACACCACTTATATCATCCAAGGTTGATGTCTGGTCTGCGGGAATTTTGTTTTATCAAATGCTCTTTGGCAGACGTCCTTTCGGACATGACCAAACACAAGAGAGAATCCTTCGTGAAGACACAATTATTAAGGCACGCAAAGTTGAATTTCCCTCTAGGCCTACTGTGTCTAATGAGGCAAAGgaTTTTATTCGGCGGTGTCTTACATATAACCAGGCCGAGAGACCAGATGTATTAACCATTGCTCAAGATCCATATCTCACTTACGCAAAAAAaaagcACCATTTTCAACTTCGCTACTCCATTCTCCCACTGAACTCTCTCAGGTTTGGTTATGATAGCTTCAACATGTTCATTAAGCAGGTTGTGATTGAAGGTTTCAAGAGTTACCGAGAGCAAATTGCCACAGAGGATTTTAGTCCTAAAGTTAACTGTGTTgTTGGTGCTAATGGATCTggcaaaacaaattttttccatGCCATTCGTTTTGTGTTGAGTGATCTCTTTCAAAACCTACGCAATGAGGATAGGCAGGCACTGCTCCATGAAGGGGCTGGACACTCAGTTTTATCTGCATTTGTGGagattgtgtttgataattcaGACAATCGTATCCcgGTTGACAAGGAGGAAGTGCACTTACGCCGGACGATCGGTATGAAAAAGGATGAATATTTTCTCGATGGAAAACACATAACAAAAACTGAAGTGATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCAAATCCGTATTATGTTGTGCAACAAGGAAAGATAGCATCCCTAACCTTGATGAAAGACTCTGAGCGATTGGATTTACTGAAGGAAATAGGTGGTACTAGAGTTTATGAGGAGAGGCGTCGTGAAAGTTTGAAAATAATGCAGGATACAGgtaacaaaagaaaacaaattatccAAGTTGTACAGTATTTAGACGAGAGGTTGAAGGAACTAGATGAGGAGAAAGAGGAACTTAGAAAATATCAGCACCTTGACAAGCAGAGAAAATCCTTGGAATATGCCATATTTAACAAAGAAGTTCAAGATGCTCAACTGAAGCTTGCAGAGATAGAAGCAGCTCGGACCAGGGTTTCTGAAATATCAGCTAAGAAGTATAATGAGGTTCTTGATGCCCAGGAGAAATCCAAAGATTTGGAAAATAAGTTGAAAGATATAACAAAGGaacatcaaaactttatcaaagaaaaagaagttatTGAAAAGCAACGAGCAACAGCAGTAAAGAAGCATACAGAGCTTGATCTTGATGTCAAAGATTTGGAAGAGAAGATCTCTGGAAATATCCATGCCAAAAAAGATGCTGCTAAACAATTGAAGATACTTGAGAAAGAAATACAAGACTCAATGAATGAACTGGAGAAAATCAGTCCTTTATATGATGATCTAGTTCAGAAAGAAAAAGACATTACTAAGCGAATAATGGAGCGCGAGAAGAAACTCAGTATACTTTATCAGAAGCAAGGACGTGCAACACAATTTTCAAGTAAAGCTGCTCGCGATAAGTGGCTTCAAAAGGAGATTGATGATCTTCAACGGGTGCTCTCTTCAAACACAACACAGGAGAAAAAGCTGATGGAAGAAATTGAACGGCTTAATGATGAAATGCATGGCTGTGATGAGAATATCAATAGCCGTAGAGCAAATATTACTACTTTGGAATCTCAAATTGCTAAGTCTCGTGAAGGGTTTAATGATTATAAAGTAGAAAGAGACAAGCTTCATGATAAGAGGAAGTCCTTATGGAACCAAGAAAATGAACTTACTGCTGAAATTGATAAACTGAGAGCAGAAGTTGAGAAGGCTGAAAAGAGTCTAGATCATGCAATTCCTGGTGATGTTAGAAGAGGGTTGAATTCAGTTCGGAAGATATGCAAAACTCACAACATTTCTGGAGTTCACGGTCCAATTATTGAGTTGCTGAACTGTGATGAAAAATTTTTCACCGCAGTTGAAGTGACTGCAGGAAACAGCTTATTTCACGTGGTTGTTGAAAATGATGACAAGTCAACCGAGATAATTAAACATCTTAATCGACAAAAAGGTGGACGTGTTACATTTATTCCACTTAACAGAGTAAATGCTCCACGCGTCACTTATCCACAGAATTCCGATGTCATACCtcttttaaagaaattgaattttagaCACGACTACACTCCCGCATTCAGTCAGGTATTCGCTAGAACAGTTATCTGCAAGAATCTGGATGTGGCTTCAAAGGTAGCTCGTACCGATGGTTTGGACTGCATAACACTGGAAGGTGATCAAGTAAGCAAAAAAGGTAGTATGACTGGTGGATTTTATGATCACAGACGATCAAGATTGAAGTTTATGAATATCATTAAGCAGAATGCTGACAGTATTCACATTAAAGAGGAGCAATTGGAGAAAGTTAAATTTGAGATACAAGAGATAGACCAACAGATTAATGAACTTGTTACCGAACAGCAGAAGGTTGATGCTCAATGTGCTCACAACAAATCAGAGATAGAAGAGCTTAAGCGGGACATTGCTAATTCTAACAAACAGAAGCCATTATTTTCTAAAGCACTTGCAAAGAAGGAGAAATCACTTGTTGATGTCCAGACTCAGATTGAGCAGCTTAAGGCTAGCATTGCTATGAAAAAAACTGAGATGGGCACAGAGCTCATTGATCATTTAACACCAGAGGAGAAAAAATTATTGTCAGATTTGAACCCTGAAATCAAAGACCTGAAAGAGAAGCTTGTTGCTTGCAAGACTGATCGCATTGAGAGTGAAGCACGGAAAGCAGAGCTGGAAACTAATCTAACCACTAATCTCAGGAGAAGAAAACAAGAGCTGGAGGCTGCGATATCATCTATTGATGCTGACTCTATGGTGATTGATGCTGAGTTGAAGAGGCAGGAACTTAGTGATGCTAAAATATTGGTTGATGATGCATCAAATCAGCTTACAAGAGTTTCTGATAGTATAACTAATCGAACCAAGCAAATTGCAAAGATCAAAGATGACATAAATAAATTGAAGTCTTTGGAGAGCGAGTATGAGAGAAAACTTGAGGAAGATGCTAAAGAATTAGAGGAAATGCTGAATAAAAAGAATACATATTCTGCTAAAGAAGAAGAATACACCAAAAAAATAAGGGAACTGGGCCCATTGACATCAGATGCTTTTGACACTTACAAACGGAGGAATATTAGAGATTTGCAAAAAATGCTGCACAGGTGCAATGATCAATTGCAACAGTTTAGTCATGTCAACAAGAAAGCACTGGATCAGTACATCAATTTCACAGAACAGCGAGAAGAACTTCAAAAAAGACAAGCTGAACTCGATGCAGGAGATGAGAAAATCAGAGAGCTAATATCAGTGCTAGATCAACGGAAGGATGAATCAATAGAACGCACTTTCAAAGGTGTTGCTAGGCATTTCCGAGAAGTATTCTCGGAACTTGTACAGGGGGGACATGGTCATCTGgttatgatgaagaagaagGATGGcgatcatgatgatgatgatcaagACGAGGATGGTCCTCGAGACGCAAATCCAGAGGGGAGAGTAGAAAAGTACATTGGAGTGAAAGTGAAGGTCTCTTTTACTGGACAAGGGGAAACACAGTCCATGAAACAGTTGTCGGGGGGTCAAAAAACTGTGGTTGCCCTTACACTTATCTTTGCTATTCAGAGATGTGATCCGGCACCATTTTATCTATTTGATGAGATTGATGCAGCATTGGATCCGCAGTACAGAACTGCTGTAGGAAATATGATCAGGCGCCTGGCAGACATAGCAAACACTCAATTTATCACGACAACGTTCCGTCCAGAGCTAGTAAAAGTTGCCGACAAGATATATGGAGTAACACATCAAAACAGGGTCAGCCGTGTTAATGTTATATCTGAGGATCTTGCTCTAGAATTCATTAATCAGGATCAGACGCAAAATGCCGAATAA 5706 0.3903 MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSSASQQQGWSSVSSAGKFSGAVEDLVEPCTSSDSDDDNGGEFLIQANTRKRPKPENDTADVFERAEAVTDGRQTSLEAVETKNNAEASRKRSGRGRGSSGSGRGRGSKSNDQTRSQISPPTVSASNGQNENVLHKDGRIKDQVHNDNSASLEEEVSSLRARIVVLEEDLRKAKLETSENQNARQQLEMELKELKALEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTIISETWEDGPALKDLNAQLKQLIESKEAIERQRKLFKKKQSDKGDGIEAEAGMLEMHEEIYKCRLASIKREEEIVLRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHALREYNIHKTLVHPHIVRLWDIFEIDTNTFCTVLEYCSGKDLDAVLKATPTLPEREARVILTQIFQGLIYMNKRTLKIIHYDLKPGNVLFDELAIAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELNKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTYAKKKHHFQLRYSILPLNSLRFGYDSFNMFIKQVVIEGFKSYREQIATEDFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRNEDRQALLHEGAGHSVLSAFVEIVFDNSDNRIPVDKEEVHLRRTIGMKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRKQIIQVVQYLDERLKELDEEKEELRKYQHLDKQRKSLEYAIFNKEVQDAQLKLAEIEAARTRVSEISAKKYNEVLDAQEKSKDLENKLKDITKEHQNFIKEKEVIEKQRATAVKKHTELDLDVKDLEEKISGNIHAKKDAAKQLKILEKEIQDSMNELEKISPLYDDLVQKEKDITKRIMEREKKLSILYQKQGRATQFSSKAARDKWLQKEIDDLQRVLSSNTTQEKKLMEEIERLNDEMHGCDENINSRRANITTLESQIAKSREGFNDYKVERDKLHDKRKSLWNQENELTAEIDKLRAEVEKAEKSLDHAIPGDVRRGLNSVRKICKTHNISGVHGPIIELLNCDEKFFTAVEVTAGNSLFHVVVENDDKSTEIIKHLNRQKGGRVTFIPLNRVNAPRVTYPQNSDVIPLLKKLNFRHDYTPAFSQVFARTVICKNLDVASKVARTDGLDCITLEGDQVSKKGSMTGGFYDHRRSRLKFMNIIKQNADSIHIKEEQLEKVKFEIQEIDQQINELVTEQQKVDAQCAHNKSEIEELKRDIANSNKQKPLFSKALAKKEKSLVDVQTQIEQLKASIAMKKTEMGTELIDHLTPEEKKLLSDLNPEIKDLKEKLVACKTDRIESEARKAELETNLTTNLRRRKQELEAAISSIDADSMVIDAELKRQELSDAKILVDDASNQLTRVSDSITNRTKQIAKIKDDINKLKSLESEYERKLEEDAKELEEMLNKKNTYSAKEEEYTKKIRELGPLTSDAFDTYKRRNIRDLQKMLHRCNDQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDGPRDANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADKIYGVTHQNRVSRVNVISEDLALEFINQDQTQNAE 1901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03508 1901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Tsu05g03508 1901 Pfam Protein kinase domain 396 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03508 1901 MobiDBLite consensus disorder prediction 139 167 - -
Tsu05g03508 1901 Coils Coil 883 913 - -
Tsu05g03508 1901 Pfam RecF/RecN/SMC N terminal domain 699 1877 IPR003395 -
Tsu05g03508 1901 Coils Coil 1581 1629 - -
Tsu05g03508 1901 ProSiteProfiles Protein kinase domain profile. 395 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03508 1901 SMART serkin_6 395 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03508 1901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 1880 IPR027417 -
Tsu05g03508 1901 Gene3D - 1683 1893 IPR027417 -
Tsu05g03508 1901 Coils Coil 346 380 - -
Tsu05g03508 1901 Coils Coil 1440 1467 - -
Tsu05g03508 1901 Pfam SMC proteins Flexible Hinge Domain 1219 1330 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu05g03508 1901 Coils Coil 957 991 - -
Tsu05g03508 1901 ProSitePatterns Protein kinases ATP-binding region signature. 401 424 IPR017441 GO:0005524
Tsu05g03508 1901 SMART SMC_hinge_2 1219 1331 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu05g03508 1901 MobiDBLite consensus disorder prediction 85 104 - -
Tsu05g03508 1901 Coils Coil 185 236 - -
Tsu05g03508 1901 Coils Coil 1020 1044 - -
Tsu05g03508 1901 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g03508 1901 Coils Coil 1173 1193 - -
Tsu05g03508 1901 SUPERFAMILY Smc hinge domain 1169 1372 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu05g03508 1901 Coils Coil 1103 1130 - -
Tsu05g03508 1901 Gene3D - 1208 1361 - -
Tsu05g03508 1901 Gene3D - 1092 1185 - -
Tsu05g03508 1901 Coils Coil 1377 1432 - -
Tsu05g03508 1901 Coils Coil 1670 1690 - -
Tsu05g03508 1901 MobiDBLite consensus disorder prediction 1744 1769 - -
Tsu05g03508 1901 CDD STKc_TLK 394 667 - -
Tsu05g03508 1901 Coils Coil 922 942 - -
Tsu05g03508 1901 Coils Coil 293 320 - -
Tsu05g03508 1901 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 697 1897 - -
Tsu05g03508 1901 Gene3D Transferase(Phosphotransferase) domain 1 386 694 - -
Tsu05g03508 1901 CDD ABC_SMC3_euk 700 863 IPR041741 GO:0005524|GO:0016887
Tsu05g03508 1901 MobiDBLite consensus disorder prediction 35 54 - -
Tsu05g03508 1901 Gene3D - 697 875 IPR027417 -
Tsu05g03508 1901 Coils Coil 1546 1566 - -
Tsu05g03508 1901 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 697 1897 - -
Tsu05g03508 1901 SUPERFAMILY Protein kinase-like (PK-like) 388 681 IPR011009 -
Tsu05g03508 1901 MobiDBLite consensus disorder prediction 1 167 - -
Tsu05g03508 1901 Gene3D - 1279 1358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03508 Tsu-Chr5 46653411 46683500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03508 378 682 MAP Kinase Kinase Kinase AT3G13530 26.299 1.13e-26 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Tsu05g03508 SMC_N 1.9e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03508 K06669 - gsj:114400455 2035.77