Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03507 ATGACTTATAGAACTAGTTTTAGCAGTAGAATTGTTACACTCTTTTTGTTGACTATTTCTTTCTTGcatgttagtttttctcttaCCTCTGATGGATTGAATCTGTTGTCACTCTTGACACACTGGACTTTTGTTCCAACTCTCATCAAGTCTAACTGGAAGGCTTCTGATTCCAATCCATGTTCATGGGTTGGTGTTCAATGTGACAATACTCATAATGTCATTTCCCTCAATCTCACTAGCGATGGGATTTTTGGTCAACTTGGACCAGAAATTGGAAACCTTTATCATCTGCAGACCCTTGTGCTGTTACGTAATGGTTTCTCTGGAACTATTCCTTCATCTCTTGGTAATTGCAGCAAACTAGTGGACCTTGATTTGTCTTTCAACCACTTGAGCGGTGAAATTCCAGTTAGTATTTGGAGAATTCCTAGTCTTGTGAATATATTGGTTCAAAACAACAGCCTCTCTGGGGAACTACCTCATGAAATGACACACCTCAAGTACCTAAAAAATATCTCATTGTTTGACAATCAGTTCTCGGGAGTCATACCTCAAAGCTTGGGAATCAACAGCAGCATAGTGAAGTTGGACTGTATGAGTAACAAGTTCAGTGGTAATATCCCGCCAAATCTTTGCTTTGGAAAGAATTTGCGTGAGCTCAATATGGGAAGCAATCGGCTTCAAGGTGGCATACCTTCTGATATTGGAAGATGTACAACTCTAAGGAGGTTGATTCTCAATGATAATAATTTCACTGGACTTCTTGCCAAGTTTGAAAGTAATTTGAATATGAAATACATGGACATGAGCAAGAACAATATTACTGGACCGATTCCATCAAGTTTGGGAAATTGCACAAACCTCACATACATTAATTTGTCATGGAACAAATTTGTAGGGCCAATACCATTAGATCTTGGAAATCTTGTGAATCTTGTGATTTTGGATTTTGCTCACAACAACTTGGAAGGTCCTTTTCCACCTCAGCTGTCAAACTGTACTAAAATGGATCGTTTTAATGTCGGATTCAATTTCCTAAATGGATCGTTCCCTTCAAGTTTAAGAATTTGGACTGGCATAACCACATTGGTATTAAGAGAAAATTACTTCACAGGAGGTATCCCTGGGTTTTTGGCTGAATTTAGCAACCTTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGAGGCAAAATTCCTCGATCAATGGGAACAATGCGTAGTTTGTTCTACGGATTGAATTTGAGTGCTAATGGATTGTCAGGTGACATTCCTGCAGAAATTGGGAAGCTAAAACTGCTGCAAAGTCTAGACATATCCTCGAACAATTTGACAGGAAGCATAGATGCTCTTGAAGGTCTTGTATCATTAATTGAAATCAATATTTCGTACAATCTTTTCAATGGTTCTGTACCAACAGGTCTAATGAAGTTATTGAATTCCTCACCATCATCATTCATGGGTAATCCTCTCCTATGCGTCAGTTGTTTGAGTTGCATTAACATTAGTTATATAAATCCATGTGTCCACAAATCAACTGATCACAAAGGTATCAGTAATGTTCAAATTGTGATTATAGAACTTGGATCCTCAATATTTATTACTGTTGTGCTCCTAATAATAATTCGAATCTATTTCCTCAAAAGATATAAGCAGGAATTCAAGATGCCATTTTCACCACTGGTCTTGGTGTTAAAGGCTATGGCTAAATTATATGATTGCTATAATTTTGGCAGAGGAATTGTGCATAAAAGCCAGCGGGGTCGAGAATCAGAAATGGCATCTGATCTTAAGCAACAGTCTGATATTGAAAGAGGAGCTACACTTAGCCAACAGTCTTACAATGAAAGCGGAGCTGCTCCAGCGTCCGATTTTAACAAATGGTTCtattatattgaaaaaggaGTTGGAAGGATTGGAGTTACATATGCTCGCGAATTCAATATCTCAGGCAAGGAGAAGTCGCCTACCCTTAAGGATGTAGTGTTGCAGGCTACTGAAAATCTAAATCAACGGTATATTATTGGCAAGGGAGGACATGGTACCGTGTACAAAGCCATGATTGGTCAACAGGTTCTTGCTGTAAAGAAGGTTGAATTTGGACGGAACAAGCAAAAGCGGCTAAGTATCATACGCAATGAAATTGAAGTCCTTGGAATGTTCAAGCATCGAAATTTGTTGAAACATGCAGACTACTGGATTGGAGAGGAATATGGTTTAGTCTTATGTGAATTCATGAAAAATGGAAGCCTTCATGATGTTTTGCATGAAAAGCAACCCCCACCACCCTTAACGTGGAATGTTCGGTGTAAAATAGCGGTTGGAATTGCTCAAGGACTACTATATCTGCATTATGATTGTGTTCAACGAATAGTGCACCGAGACATAAAACCAAAGAACATACTTCTTGATGACAATATGGAGCCTATTATTGCTGATTTTGGCACTGCCCTATGCAAGAAGCTGTATGAAGATTCTAATAGTCATTCTAAAACCCGAAAAATGCTTTCGTCACACGTTGTTGGTACTCCTGGCTATATTGCACCGGAGAATGCATATGATATTGTGCCAGGAAGAAAGTCGGATGTATACAGCTATGGAGTTGTTTTGCTCGAGCTAATAACCAGAAAGAAACTGTTAGTCCCCTCTTTGAATGATGAGGCAGACGAGACCCCCTTAGTGATCTGGGCTAAAACTGTATGGCTGGAAACAGgcaaaattgataaaattgttGATCCGTACCTTGCAAGTGGATTTTCCAATTCAGTAGCACTAGCCAAGCAAGTTTCTGCAGTCCTTTCATTGGCATTCCGATGCATAGAGAAGGATCCAGGAAAGAGGCCGAACATGAAAGGTGTTATCAGCTTTTATAATAAGAACTTGTTTAAGCTGAGGTGCGATGAGGTTCAATATGTTGATGGGCTTGCAATTAAACTGATGGGAAATGGTACGTTGCAGGCAGGAAAGGTTGTTCGGGTAGCTTCTCTAGTTGTTCCAAAAATAACCTATGCTTGGCCTAGTTTAATCTTCCTTCCCTCTATCACTGGTCCAATACTCACCAAACCTTTCAACTGGTTTTTCCTATTACGTTGGGGTCAATATAGGCATCTGCAGAAATCCTTACACTCACAGACCAAATCATACTACTCTATAAGTATAAACACTGATCAAACCGAGGCCACTGTCCAAATTAGTGAATAG 3201 0.3886 MTYRTSFSSRIVTLFLLTISFLHVSFSLTSDGLNLLSLLTHWTFVPTLIKSNWKASDSNPCSWVGVQCDNTHNVISLNLTSDGIFGQLGPEIGNLYHLQTLVLLRNGFSGTIPSSLGNCSKLVDLDLSFNHLSGEIPVSIWRIPSLVNILVQNNSLSGELPHEMTHLKYLKNISLFDNQFSGVIPQSLGINSSIVKLDCMSNKFSGNIPPNLCFGKNLRELNMGSNRLQGGIPSDIGRCTTLRRLILNDNNFTGLLAKFESNLNMKYMDMSKNNITGPIPSSLGNCTNLTYINLSWNKFVGPIPLDLGNLVNLVILDFAHNNLEGPFPPQLSNCTKMDRFNVGFNFLNGSFPSSLRIWTGITTLVLRENYFTGGIPGFLAEFSNLRELQLGGNLFGGKIPRSMGTMRSLFYGLNLSANGLSGDIPAEIGKLKLLQSLDISSNNLTGSIDALEGLVSLIEINISYNLFNGSVPTGLMKLLNSSPSSFMGNPLLCVSCLSCINISYINPCVHKSTDHKGISNVQIVIIELGSSIFITVVLLIIIRIYFLKRYKQEFKMPFSPLVLVLKAMAKLYDCYNFGRGIVHKSQRGRESEMASDLKQQSDIERGATLSQQSYNESGAAPASDFNKWFYYIEKGVGRIGVTYAREFNISGKEKSPTLKDVVLQATENLNQRYIIGKGGHGTVYKAMIGQQVLAVKKVEFGRNKQKRLSIIRNEIEVLGMFKHRNLLKHADYWIGEEYGLVLCEFMKNGSLHDVLHEKQPPPPLTWNVRCKIAVGIAQGLLYLHYDCVQRIVHRDIKPKNILLDDNMEPIIADFGTALCKKLYEDSNSHSKTRKMLSSHVVGTPGYIAPENAYDIVPGRKSDVYSYGVVLLELITRKKLLVPSLNDEADETPLVIWAKTVWLETGKIDKIVDPYLASGFSNSVALAKQVSAVLSLAFRCIEKDPGKRPNMKGVISFYNKNLFKLRCDEVQYVDGLAIKLMGNGTLQAGKVVRVASLVVPKITYAWPSLIFLPSITGPILTKPFNWFFLLRWGQYRHLQKSLHSQTKSYYSISINTDQTEATVQISE 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03507 1066 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515
Tsu05g03507 1066 SUPERFAMILY L domain-like 194 498 - -
Tsu05g03507 1066 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Tsu05g03507 1066 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Tsu05g03507 1066 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Tsu05g03507 1066 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 132 - -
Tsu05g03507 1066 ProSiteProfiles Leucine-rich repeat profile. 433 455 IPR001611 GO:0005515
Tsu05g03507 1066 ProSiteProfiles Protein kinase domain profile. 669 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03507 1066 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Tsu05g03507 1066 Gene3D Transferase(Phosphotransferase) domain 1 746 969 - -
Tsu05g03507 1066 Pfam Protein kinase domain 673 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03507 1066 Gene3D Phosphorylase Kinase; domain 1 651 745 - -
Tsu05g03507 1066 Pfam Leucine rich repeat 241 299 IPR001611 GO:0005515
Tsu05g03507 1066 SUPERFAMILY Protein kinase-like (PK-like) 658 955 IPR011009 -
Tsu05g03507 1066 Gene3D Ribonuclease Inhibitor 191 259 IPR032675 -
Tsu05g03507 1066 SUPERFAMILY L domain-like 36 266 - -
Tsu05g03507 1066 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 651 967 - -
Tsu05g03507 1066 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 121 584 - -
Tsu05g03507 1066 SMART serkin_6 669 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03507 1066 PANTHER OS08G0446200 PROTEIN 651 967 - -
Tsu05g03507 1066 PANTHER OS08G0446200 PROTEIN 121 584 - -
Tsu05g03507 1066 PANTHER OS08G0446200 PROTEIN 8 132 - -
Tsu05g03507 1066 Gene3D Ribonuclease Inhibitor 260 503 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03507 Tsu-Chr5 46646695 46651784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03507 652 956 Receptor kinase-like Gene Family AT1G73080 43.770 2.83e-69 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu05g03507 Pkinase 4.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03507 - - mtr:MTR_5g087340 1566.98