Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03499 ATGTTGAAAGGTTCAAACTTGACATATACTTCGGACATCATGAAATCCAAGGTTCTTTCACAACGCGAAGATATTGTGAGCTACAACACTGACACAATGCCAAATACAGATAGTTTCATAGGCGATTCAAGAGCGAATGTTCCATTCCCTTGTGATTGCATCAATGATGATTTTCTTGGTCACACATTTTTCTACCAGCATCAGCAACAAGATACATATGCTTCAATTGCTGAGTTCACTTTTAGCAATTTGACCACTAAGGAGAGGATCGAAAGAGACAACGTTTATGCAGAAAACTCTATTCCTAAATTTGTGAAGGTTAATGTTACCGTTAACTGTTCCTGTGGGAACAGAAAGGTTTCCAAGGATTATGGTTTGTTCATCACATATCCACTTAGAAGTGGGGATACTTTGGAGTCTATTGCAAAGGATAACGAGCTCGATGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTGGATTTCAGCCAAGGGCATGGTCTTGTTTTTATTCCTGGGAAAGATGTAAATGGAGTTTATGTTCCCTTGCCCCCTAGATATGCAGATCATTTAGCTAGAAGTTTAGTTACTGCTGGAATATCTACTGGAGGAATATGCATGGTTCTGTTATCATCAGTTTGTATATATGTTAGATACTTCCGAAAGAAGAATGTAGAGAAATCTAAATTGACACCAGAAGATTCAATGGCACCTTCAACTAAGGATGCTGATAAAGATTCCAAATTTATTGTGGTGGACAAATCGCCAGAGTTTTCGTACGAAGAACTAGCTAATGCTACAGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAAGTCTACTATGGACAGCTGAAAGGCAAGAGAACTGCAATAAAAAAGATGACGATGCTAGCTACAAGAGAATTTCTTGCTGAAATGAAAGTCTTAACAAGTGTTCATCACTGCAACCTGgTACGCTTGATTGGATATTGTATCGAGGGATCTCTATTCCTTGTGTATGAGTACATGGACAATGGAAACTTAAGCCAACATCTACATAATTCAGAGAAAGAGCCTATGACATGGTCTACCAGGTTGCGAATTTCTCTAGATGTAGCGAGAGGCCTCGAGTATATTCATGACCATTCAGTGCCTGTATATATCCACCGCGACATTAAATcagataatattttattaaatggaAACTTCAATGGGAAGATTGCAGATTTTGGAATGACCAAACTGTCTAATGTTGCAAGTTCAACGGATAACACTGATCATGTCGCTGGCACATTTGGTTACATGCCACCTGAAAATGCATACGGACATATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTGTACGAACTAATTTCTGCTAAAGCTGCCGTGGTGAAAATTGATAAACCTAGTACTGAGTTTAAGAGCCTTGAGATTAAGACCGATGAATCTATTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATCAAGAGGTAGATCCTATGGAAGGTCTAAGAAAGCTGGTGGATCCAAGGCTAGGAGATAACTATTCAATTGATTCCATTAACAAGATGGCACAGCTTGCCAAGGCTTGTATAAACCGGGATCCGAAGCGACGTCCAAGAATGGGAGATGTTGTAGTTTctcttatgaaaataaattctACAATTGATGATGGATGTAGGATAGATAGTGCAGCATTGAGTCTGGCTATAGAGCATGACTAA 1740 0.3856 MLKGSNLTYTSDIMKSKVLSQREDIVSYNTDTMPNTDSFIGDSRANVPFPCDCINDDFLGHTFFYQHQQQDTYASIAEFTFSNLTTKERIERDNVYAENSIPKFVKVNVTVNCSCGNRKVSKDYGLFITYPLRSGDTLESIAKDNELDAELLQRYNPGVDFSQGHGLVFIPGKDVNGVYVPLPPRYADHLARSLVTAGISTGGICMVLLSSVCIYVRYFRKKNVEKSKLTPEDSMAPSTKDADKDSKFIVVDKSPEFSYEELANATDNFSLANKIGQGGFGEVYYGQLKGKRTAIKKMTMLATREFLAEMKVLTSVHHCNLVRLIGYCIEGSLFLVYEYMDNGNLSQHLHNSEKEPMTWSTRLRISLDVARGLEYIHDHSVPVYIHRDIKSDNILLNGNFNGKIADFGMTKLSNVASSTDNTDHVAGTFGYMPPENAYGHISRKIDVYAFGVVLYELISAKAAVVKIDKPSTEFKSLEIKTDESIDEYKSLVALFDEVIDQEVDPMEGLRKLVDPRLGDNYSIDSINKMAQLAKACINRDPKRRPRMGDVVVSLMKINSTIDDGCRIDSAALSLAIEHD 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03499 579 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 3 12 566 - -
Tsu05g03499 579 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Tsu05g03499 579 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 566 IPR044812 GO:0019199|GO:0045087
Tsu05g03499 579 Gene3D Transferase(Phosphotransferase) domain 1 340 569 - -
Tsu05g03499 579 SMART serkin_6 269 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03499 579 Gene3D Phosphorylase Kinase; domain 1 239 339 - -
Tsu05g03499 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Tsu05g03499 579 SUPERFAMILY Protein kinase-like (PK-like) 248 555 IPR011009 -
Tsu05g03499 579 ProSiteProfiles Protein kinase domain profile. 269 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03499 579 Pfam Protein tyrosine and serine/threonine kinase 271 465 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03499 Tsu-Chr5 46468997 46472149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03499 25 560 Receptor kinase-like Gene Family AT3G21630 50.722 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu05g03499 PK_Tyr_Ser-Thr 8.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03499 - K13429 mtr:MTR_5g086540 803.512