Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03498 ATGAAACCAATCAAATTCAGATTATCACTTTTATTCTTGTTACTGGCCACTAAATGCTTCAGTTCAGAATCAAAATGTAGCAAAACTTGTGACTTAGCTCTAGCTTCCTATTATATAGAGGTAGGTATAAGCTTGCCATATATTTCGGACATCATGAAATCCAAGGTTGTTTCAAGACCTGAAGATATTGCCATCTACAGCAATGGCACATTAAAAAACATAGATGTTATCCAATCTCACACAAGACTGAATATTCCATTCCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACTTTTCTGTACAAGGCTCAACATGGAGATGATTATGCTTCAATTGCTGAGTCAACTTTTAGCAATTTGACCACCGAGGACTGGATGGAGAGAGTCAACTTTCATTCTACAAGCAATATTCCTAATAATGAAACTCTTAATGTTACTGTTAACTGTTCCTGTGGGAACAGAGAGGTTTCTACTGATTATAGTTTGTTCATCACATATCCACTTAGAAGAGAGGACACTTTGGAGTCAATTGCAAAGGATACCAAACTTGATGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTGGATTTCAGCCAAGGAACTGGTCTTGTTTTTATTCCGGGGAAAgcagGTCATTTAGCTAGAAGTTTAATTACTGCTGGAATATCTATTGGAGGAATATACATTGTTCTGTTATTATCAATTTGTATATATGTTCGATACATCAGAAAGAAGAACGTAGAGAACTCTAAATTGACACCAGAAGATTCAATGGAGCCTTCAACTAAAGACACTGATAAAGATTCCAAATTTATTGTGGTGGACAAATCGCCAGAGTTTTCGTACGAAGAACTAGCTAATGCTACAGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAAGTCTACTATGGAGAGCTGAATGGCAAGAAAACTGCAATAAAAAAGATGACGATGCTAGCTACAAGAGAATTTCTTGCTGAAATGAAAGTCTTAACAAGTGTTCATCACTGCAACCTGgTACACTTGATTGGATATTGTATCGAGGGATTTCTATTCCTTGTGTATGAGTACATGGACAATGGAAACTTAAGCCAACATCTACATAATTCAGAGAAAGAGCCTATGACATGGTCTACCAGGCTGCAAATTGCTCTGGATGTAGCGAGAGGTCTCGAGTATATTCATGATCATTCTGTGCCTGTATATATCCATCGCGACATAAAATCGGATAATATTTTACTAAATGGAAACTTCAATGGGAAGATTGCAGATTTTGGAATGACCAAACTGACTGATATCGCAAGTTCAACAGATAACACTGATCATGTCGCTGGCACATTTGGTTATATGCCGCCTGAAAATGCATACGGGCATATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTATACGAACTAATTTCTGCTAAAGCAGCTGTGGTCAAAATTGATAAACGTAGTACTGAGTTCAAGAGCCTTGAGATTAAGACCAACGATTCTATTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATCAAGAGGTAGATCCTATGGAAGGTCTAAGAAAGCTAGTGGATCCAAGGCTAGGAGATAACTATTCAATTGATTCCATGAACAAGATGGCACAGCTTGCAAAGGCTTGCATAAACCGGGATCCGAAACGACGTCCAAGAATGGGAGATGTTGTAGTTTCTCTTATGAAATTAAATTCTACTATTGATGATGGAAGTAGGAGAGATAGTGCAGCATTGAGTCTGGCTATAGAGCATGACTAA 1815 0.378 MKPIKFRLSLLFLLLATKCFSSESKCSKTCDLALASYYIEVGISLPYISDIMKSKVVSRPEDIAIYSNGTLKNIDVIQSHTRLNIPFPCDCINDEFLGHTFLYKAQHGDDYASIAESTFSNLTTEDWMERVNFHSTSNIPNNETLNVTVNCSCGNREVSTDYSLFITYPLRREDTLESIAKDTKLDAELLQRYNPGVDFSQGTGLVFIPGKAGHLARSLITAGISIGGIYIVLLLSICIYVRYIRKKNVENSKLTPEDSMEPSTKDTDKDSKFIVVDKSPEFSYEELANATDNFSLANKIGQGGFGEVYYGELNGKKTAIKKMTMLATREFLAEMKVLTSVHHCNLVHLIGYCIEGFLFLVYEYMDNGNLSQHLHNSEKEPMTWSTRLQIALDVARGLEYIHDHSVPVYIHRDIKSDNILLNGNFNGKIADFGMTKLTDIASSTDNTDHVAGTFGYMPPENAYGHISRKIDVYAFGVVLYELISAKAAVVKIDKRSTEFKSLEIKTNDSIDEYKSLVALFDEVIDQEVDPMEGLRKLVDPRLGDNYSIDSMNKMAQLAKACINRDPKRRPRMGDVVVSLMKLNSTIDDGSRRDSAALSLAIEHD 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03498 604 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Tsu05g03498 604 Pfam Protein tyrosine and serine/threonine kinase 296 577 IPR001245 GO:0004672|GO:0006468
Tsu05g03498 604 SUPERFAMILY Protein kinase-like (PK-like) 271 579 IPR011009 -
Tsu05g03498 604 Gene3D Transferase(Phosphotransferase) domain 1 365 598 - -
Tsu05g03498 604 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 11 594 IPR044812 GO:0019199|GO:0045087
Tsu05g03498 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Tsu05g03498 604 Gene3D Phosphorylase Kinase; domain 1 264 364 - -
Tsu05g03498 604 SMART serkin_6 294 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03498 604 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 3 11 594 - -
Tsu05g03498 604 ProSiteProfiles Protein kinase domain profile. 294 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03498 Tsu-Chr5 46464799 46467878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03498 4 585 Receptor kinase-like Gene Family AT3G21630 48.701 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu05g03498 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03498 - K13429 mtr:MTR_5g086540 833.172