Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03496 atggcTAGAATCCAAAGAAAACTCTTCCCAACAGAAAGTaccacaaaccaaacattagATTGTTATGGCTTTTGTGACCCTTCATGTCCTTCAAATTGTTACACTAATACAAATTACTATTTCTCACCCCCACCAATAGAACACACAACACAAGTTTCCTCTTACTTCATCATCCTAATTTCATTATTCTCATTGATTTTTATCATCATTGGTTTTTATGTGATCAAAGTGAAATGCTATAATGAAATGTGTGGTTGGAGAATTAATAACACTTTTCGCTCACAAACCGAAAACTCCGAAGAGTTTCTTAATGAAAATCAGGTCGGTCccaatcacaatcacaatcacGATCACGATCACGATCACCCGGTGTGGCTCATTGCTACAGTTGGTTTACAACAATCGATTATAAATTCGATTACGGTTTGCAAgtatcgaaaaaatgaaggaTTAATTGAAGGAACAGAATGTTCTATTTGTTTGAATGAGTTTCATGAAGATGAAACTTTAAGACTATTACCAAAGTGTAGTCATGCTTTTCACATATCTTGTATTGATACTTGGTTGAGATCTCATACTAATTGTCCTCTTTGTCGAGCCGGTATTGTTTCCAACAATGTTACTCCTGAAGTAACCGTATCGAATTCGGAACAAGAAAATAACAACTtggaaagaaatcaagatactCAAATGGATAATCCAAGGAATGATCAACAAGATGTGGTAAGTAACAATATTGTTATCAATGTGGCATTTGAGGAGGGTTCTGTTTCAACTGATCCTAGAAGCCATGATGAAGTTATGGATCATCTAGAGGAATATGAGAAAGAGTTGCACAAGGTTAGTCTTTGGAAGGTTATTActcaaaaaaatagtaaaacaaTGCGTCGGTGTTCAATTGAAGAGTGTTTACATATAAGGCCAGTAGCTATGAAAAAGTCTTTCACTCTGCATGGAAGGAAgagttttaaaacaagatatgtAACTATGAATTAA 996 0.3102 MARIQRKLFPTESTTNQTLDCYGFCDPSCPSNCYTNTNYYFSPPPIEHTTQVSSYFIILISLFSLIFIIIGFYVIKVKCYNEMCGWRINNTFRSQTENSEEFLNENQVGPNHNHNHDHDHDHPVWLIATVGLQQSIINSITVCKYRKNEGLIEGTECSICLNEFHEDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAGIVSNNVTPEVTVSNSEQENNNLERNQDTQMDNPRNDQQDVVSNNIVINVAFEEGSVSTDPRSHDEVMDHLEEYEKELHKVSLWKVITQKNSKTMRRCSIEECLHIRPVAMKKSFTLHGRKSFKTRYVTMN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03496 331 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 248 325 - -
Tsu05g03496 331 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Tsu05g03496 331 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 246 IPR044675 -
Tsu05g03496 331 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 248 325 IPR044675 -
Tsu05g03496 331 SMART ring_2 157 198 IPR001841 -
Tsu05g03496 331 SUPERFAMILY RING/U-box 147 205 - -
Tsu05g03496 331 Pfam Ring finger domain 156 199 IPR001841 -
Tsu05g03496 331 SMART FANCL_C_2 153 206 - -
Tsu05g03496 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
Tsu05g03496 331 MobiDBLite consensus disorder prediction 212 238 - -
Tsu05g03496 331 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 246 - -
Tsu05g03496 331 CDD RING-H2_EL5_like 156 199 - -
Tsu05g03496 331 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03496 Tsu-Chr5 46455869 46456925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03496 1 233 C3H Transcription Factor Family AT1G72220 43.636 1.24e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03496 - - mtr:MTR_5g064890 515.768