Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03490 ATGAAACCAACAAAATTCATATCatcatttttattcttattattactATCCACTAAATCTTTCATAACAGAATCAAAATGTAGCAAAACTTGTAACATAGCTTTAGCTTCATATTATCTAACAAATGATTCATCTTCAAATCTAACATATGTTTCAAACATCATGCAATCAAATCTTGTTACAAAACCAGAAGATATTGTCAGTTACAACTCAGACACAATAAAAAGCAAAGATTTTATTCAATCTTCTACAAGAGTTAATGTTCCATTTCCTTGTGATTGTATCAATGATGAGTATCTTGGTCACACTTTTCAATACCATGTTGTAAAAGGAGATACATATTTGTCTGTTGCAAATAATAGTTATTCCAATTTAACAACTGCTGAATTTTTGCATAGCTTTAATAGCTATGATTCAAATGATATTCCTGATACTGCAACTCTTAATGTTACTGTTAATTGTTCTTGTGGGAACAGTGATGTTTCTAAGGAGTATGGTTTGTTTATTACATATCCTCTTAGAAGTGAAGATTCTTTGCAATTGATTTCTAATAAGACTCAAATTGATGCTGATGTTCTGCAAAAGTATAATCCTGGTGTTAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGAAAAGACCAAAATGGTAACTATGTTCGTTTTCACACCAGCACTGGAGGCCTATCAGGTGGAGTTATCACTGGAATATCGATTGGAGCAGTAGCAGGACTATTGCTATTAGCATTATGTATTTACGTTACATATTACCGAAAGAAGAAAGTACGAATGCAAACTTTGCACTCAGAAGAATCCGGCGCGATCTTCGCTCAAGTTAAGAATGATGAAGTCTCTGGAAATGCTACATATGGAACTTCAGATTCTGCGAGTCCTGCTAATATCGTTGGCATTAGGGTGGAAAAATCAGGGGAGTTTTCATATGAAGAACTAGCTAATGCCACAAATAACTTCAATATGGCTAATAAAATCGGTCAAGGTGGTTTCGGTGAAGTCTTTTACGCAGAACTGAACGGCGAGAAAGCTGCAATAAAAAAGATGGATATGAAAGCATCAAAAGAATTTCTTGCTGAACTTAAGGTGTTGACGCGTGTTCATCACTTGAACCTGGTACGGTTGATTGGATATTGCATTGAGGGATCCCTTTTTCTTGTCTATGAATACATTGATAACGGAAACTTAAGCCAACATCTACGTAGTTCAGATGGAGAACCATTGCAATGGTCTACTAGGGCTAACATTGCTCTGGATTCAGCTAGAGGTCTTGAATACATTCATGAACATACCGTGCCTACATATATTCATCGCGACATAAAGtcagaaaatattttactaGACAAAAACTTCCGCGCTAAGgTTGCAGATTTTGGATTAACTAAGCTGATTGAAGCTGGAATTTCATCAGTTCCAACTGCTAATATGGCAGGCACATTTGGTTATATGCCACCAGAATATGCATATGGTAGTGTTTCTTCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTATATGAACTAATTTCTGCTAAAGGAGCTATAATAATGGGTGCTGAATTAAAGGGTCTTGTAAATTTGTTTGATGAAGTTTTTGTTGGTCCAAATCCTATAGAAGGTCTTAAAAAACTGGTGGATCCTAGACTTGGAGATAACtattcaattgattcaattttcAAGATGGCACAAATTGCCAAAGTATGCACTGAGAGTGATCCACATCAACGTCCAAATATGAGTTCTGTTGTAGTTGCTCTTACCACATTAACTTCAACTACTGAGGATTGGGATATTacttctatatataaaaatccAAATCTTGTAAATTTAATGTCCGGAAAATAG 1860 0.3409 MKPTKFISSFLFLLLLSTKSFITESKCSKTCNIALASYYLTNDSSSNLTYVSNIMQSNLVTKPEDIVSYNSDTIKSKDFIQSSTRVNVPFPCDCINDEYLGHTFQYHVVKGDTYLSVANNSYSNLTTAEFLHSFNSYDSNDIPDTATLNVTVNCSCGNSDVSKEYGLFITYPLRSEDSLQLISNKTQIDADVLQKYNPGVNFSQGSGLVYIPGKDQNGNYVRFHTSTGGLSGGVITGISIGAVAGLLLLALCIYVTYYRKKKVRMQTLHSEESGAIFAQVKNDEVSGNATYGTSDSASPANIVGIRVEKSGEFSYEELANATNNFNMANKIGQGGFGEVFYAELNGEKAAIKKMDMKASKEFLAELKVLTRVHHLNLVRLIGYCIEGSLFLVYEYIDNGNLSQHLRSSDGEPLQWSTRANIALDSARGLEYIHEHTVPTYIHRDIKSENILLDKNFRAKVADFGLTKLIEAGISSVPTANMAGTFGYMPPEYAYGSVSSKIDVYAFGVVLYELISAKGAIIMGAELKGLVNLFDEVFVGPNPIEGLKKLVDPRLGDNYSIDSIFKMAQIAKVCTESDPHQRPNMSSVVVALTTLTSTTEDWDITSIYKNPNLVNLMSGK 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03490 619 SMART serkin_6 325 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03490 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 619 IPR044812 GO:0019199|GO:0045087
Tsu05g03490 619 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Tsu05g03490 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Tsu05g03490 619 Gene3D Phosphorylase Kinase; domain 1 298 395 - -
Tsu05g03490 619 Pfam Protein tyrosine and serine/threonine kinase 326 589 IPR001245 GO:0004672|GO:0006468
Tsu05g03490 619 CDD STKc_IRAK 331 588 - -
Tsu05g03490 619 PANTHER LYSM RECEPTOR KINASE 1B 8 619 - -
Tsu05g03490 619 SUPERFAMILY Protein kinase-like (PK-like) 308 591 IPR011009 -
Tsu05g03490 619 ProSiteProfiles Protein kinase domain profile. 325 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03490 619 Gene3D Transferase(Phosphotransferase) domain 1 396 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03490 Tsu-Chr5 46373865 46378910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03490 13 619 Receptor kinase-like Gene Family AT3G21630 55.161 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu05g03490 PK_Tyr_Ser-Thr 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03490 - K13429 mtr:MTR_5g086030 1038.1