Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03482 ATGTTAGGGTTTGGAGGACAACAAAGTTGCAGTGAGATTTCATCTATGgaacatcatcaacatcataTGATGAACATGGAAACTAATGTTAATAGGAAGTTTTTTTCATTTCCTTTGAGTAACAATAACTCTTCTGGTGTTCAAGTTCATCATAACTACAATCAACATcagaacaacaacaataacactTCTTCAAGTGTTGTTGTTAGAGATAAAATCATGGCACATCCTCTCTTTCATCGTCTCTTGTCTTCTTACCTCAATTGCTTGAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGATTCATGTGCAAAATGTGAAGCTTTGAATGGTTCAAGGAGTAGTTCTTGCATAGGTGAAGATCCAGGTTTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACAAAACCCTTCAAAGAAGCTATGCTTTTTCTTTCAAGAATTGAGTCTCAGCTTAAGGCTCTTGCTGTTTCAACTGACTTTGGTCAAAGTGAACCAGCTTCACATAATGAGATTGATATGCATGAGAACAACCTTGATACTCAAGGTGAAGATCAGGAATTAAAAGTGCAGCTTTTGCGCAAGTATAGTGGATATCTTGGCAGCCTCAAGAAAGAgtttttaaagaagaaaaagaatggaAAGTTACCAAAGGAAGCTCGGCAGCAACTACTTGATTGGTGGAACAGACATTACAAATGGCCTTACCCATCGGAAACTCAAAAGCAAGCACTAGCAGAATCCACAGGCCTAGATTTGAAGCAGATCAACAATTGGTTCATTAATCAAAGAAAACGACACTGGAAACCTTCTGAAGATATGCAATTTGCTGTGATGGATGCAACAAACTACTATATGGAAAATGTCATGTGCAAACCATTTCCAATGGATGCAGCCATGCCTATGCTTCTTTAG 948 0.366 MLGFGGQQSCSEISSMEHHQHHMMNMETNVNRKFFSFPLSNNNSSGVQVHHNYNQHQNNNNNTSSSVVVRDKIMAHPLFHRLLSSYLNCLKVGAPPEVVASLEDSCAKCEALNGSRSSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKALAVSTDFGQSEPASHNEIDMHENNLDTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSETQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAAMPMLL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03482 315 Pfam ELK domain 198 219 IPR005539 GO:0003677
Tsu05g03482 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 305 - -
Tsu05g03482 315 SUPERFAMILY Homeodomain-like 220 292 IPR009057 -
Tsu05g03482 315 CDD homeodomain 230 282 IPR001356 GO:0003677
Tsu05g03482 315 Pfam Homeobox KN domain 238 277 IPR008422 GO:0003677|GO:0006355
Tsu05g03482 315 ProSitePatterns 'Homeobox' domain signature. 256 279 IPR017970 GO:0000981|GO:0006355
Tsu05g03482 315 SMART HOX_1 220 285 IPR001356 GO:0003677
Tsu05g03482 315 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 305 - -
Tsu05g03482 315 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Tsu05g03482 315 Pfam KNOX2 domain 120 166 IPR005541 GO:0003677|GO:0005634
Tsu05g03482 315 SMART KNOX2_2 117 168 IPR005541 GO:0003677|GO:0005634
Tsu05g03482 315 Gene3D - 216 289 - -
Tsu05g03482 315 ProSiteProfiles ELK domain profile. 198 218 IPR005539 GO:0003677
Tsu05g03482 315 ProSiteProfiles 'Homeobox' domain profile. 218 281 IPR001356 GO:0003677
Tsu05g03482 315 Pfam KNOX1 domain 69 109 IPR005540 GO:0003677|GO:0005634
Tsu05g03482 315 SMART ELK_2 198 219 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03482 Tsu-Chr5 46279081 46283194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03482 69 308 Homeobox Transcription Factor Family AT1G62360 68.235 1.44e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tsu05g03482 KNOX2 8.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03482 - - cam:101495840 491.5