Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03479 ATGGCATCATATCCAAATCCAACCTTAACAACACTAATCATAATCCTCACAACAATTTCCACTCTCTTCATCCCAAAAACAAATTCCCAACAAGAATATGTAAACAACAAACAACTAGATTGTGATAACACATACAACTCAACTTCAGGCAACATTTGCAACAGCATAAATTCATGTCAATCATATCTCACATTCAAATCAACACCAAATTACAACACACCCTCTTCCATTTCAAATCTTCTCAACACAACACCTTCCTTAATCTCTCAATCCAACAACATCTCCACCATCCAATCATTCCCCTTAGAAACAATCACAACCGTCCCAATTAACTGTTCATGTTCAGGTAACAAAAAATACTATCAACATAACTCTACCTACACTTTGAAAACCGTCGGTGAAACTTACTTCACCGTCGCTAATATTACCTACCAAGCTTTAACTACTTGTCAAGCTCTTATTGCTCAGAATCCTTCTCATCCTGTTAAAGATCTCAATCCTGGTGACAAAATAACGGTTCCTTTAAGATGTGCTTGTCCCACAAAAAAACAGAGTGATGAAGGATTCAAGTATCTTCTCACATATTTGGTTTCTGAAGGTGAATCAGTTTCTTCCATTGCTGATATTTTTGGTGCTGATGTTCAAAGTGTTTATGAAGCTAATGAACTTTCTTCAACTTCCATTATTTTCTACTTCACACCACTTTTAATCCCTCTCAAAAATGAACCAccgaaaaatattataaaacaaGCTTCACCGCCGGAGTCTCCGCCGGAGACACCGGATTCCGGTGGATCCTCCTCTTCCAAGAAATGGGTCATTATCGGTGTCGCGGTTGGAGTTGTTGTTTTGATTCTGGTGGGTCTTGCTCTGTTTTTCCTCTGTTTCCGGCGAAAGCAACCGGAGCAACCACCGTCGAGGGTTAAGCAAGTTTCAGATTCTGAAACAAAAAAGATTTCAGAttttaattcaacaacaacaaatactcAATCGTGGTCTCTTTCTTCTGAAGGGATTCGATATGCGGTTGATTCATTGACTAAGTATAAATATGAAGAATTGCAAAATGCTACAAATTTTTTCAGTGAAGAGAATAAGATTAAAGGTTCTGTTTATAGAGCTTCTTTTAAAGGTGATGATGCTGCTGTTAAGATTCTTAAAGGTGATGTTTCTTCTGAGATAAACATTTTGAAGAGAATTAATCATGCTAATATTATAAGGTTATCTGGTTTTTGTGTCTACAAAGGTAACACTTATCTTGTTTATGAATTTGCTGAGAATAAATCTCTTGATGATTGGCTTCACATTGAGAAAAACAAGAATAATGATGAGAAAGTGAAATCTAATTCTATGTTTTTGAGTTGGTTTCATAGAGTTCAAATTGCTCATGATGTTGCTGATGCACTTAATTATCTTCATAATTATGCTAATCCACCACATGTTCATAAGAATTTGAAAAGTGGTAATGTACTTTTAGATAGAAATTTTAGAGGTAAAGtttcaaattttggtttagCAAGAGTTATGGAGAATGAAGGTGAAGAAGGGTTTCAATTAACAAGACATGTTATAGGAACACAAGGTTATATGGCACCTGAATATATTGAGAATGGTTTAATTACTCCAAAAATGGATGTTTTTGCTTTTGGTGTTGTGATTCTTGAACTTCTTTCTGGTAAAGAAGTTGTTAATGATGATAAGAATAATGGTTTAGGGGATCAACTTTTGTCTTTAACTGTTAATCAAGTTTTTGAAGGGGAAAATGTTAGAGAGAAACTTAAAGGTTTTATGGATCCAAATTTGAGAGATGAATATCCTTTGGAACTTGCTTATTCAATGGCTGAGATTGCTAAAAGATGTGTTGCTAAGGATCTTAATACAAGACCTAATGTTTCTGAGGTTTTTATGGTTTTGTCTAAGATTCAATCTTCTACATTGGATTGGGATCCTTCTGATGAACTTGAACGGTCTAGATCTGagTTTTATGGATCTGGATCGCCTGCAGTAGTAGGCGCACACAGTTTCGATCTATTAGAGCAGGACGCTGTGGTTTGTCCTTTTCCTTCTGTTTCACCAGAACAGCAAAACATGCATGCTGCTACTGAAGCAGTGATTATAAAGGTTGAAACCAACGAGtag 2139 0.3502 MASYPNPTLTTLIIILTTISTLFIPKTNSQQEYVNNKQLDCDNTYNSTSGNICNSINSCQSYLTFKSTPNYNTPSSISNLLNTTPSLISQSNNISTIQSFPLETITTVPINCSCSGNKKYYQHNSTYTLKTVGETYFTVANITYQALTTCQALIAQNPSHPVKDLNPGDKITVPLRCACPTKKQSDEGFKYLLTYLVSEGESVSSIADIFGADVQSVYEANELSSTSIIFYFTPLLIPLKNEPPKNIIKQASPPESPPETPDSGGSSSSKKWVIIGVAVGVVVLILVGLALFFLCFRRKQPEQPPSRVKQVSDSETKKISDFNSTTTNTQSWSLSSEGIRYAVDSLTKYKYEELQNATNFFSEENKIKGSVYRASFKGDDAAVKILKGDVSSEINILKRINHANIIRLSGFCVYKGNTYLVYEFAENKSLDDWLHIEKNKNNDEKVKSNSMFLSWFHRVQIAHDVADALNYLHNYANPPHVHKNLKSGNVLLDRNFRGKVSNFGLARVMENEGEEGFQLTRHVIGTQGYMAPEYIENGLITPKMDVFAFGVVILELLSGKEVVNDDKNNGLGDQLLSLTVNQVFEGENVREKLKGFMDPNLRDEYPLELAYSMAEIAKRCVAKDLNTRPNVSEVFMVLSKIQSSTLDWDPSDELERSRSEFYGSGSPAVVGAHSFDLLEQDAVVCPFPSVSPEQQNMHAATEAVIIKVETNE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03479 712 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 20 657 - -
Tsu05g03479 712 Pfam Protein kinase domain 388 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03479 712 Gene3D Transferase(Phosphotransferase) domain 1 425 656 - -
Tsu05g03479 712 SUPERFAMILY Protein kinase-like (PK-like) 330 635 IPR011009 -
Tsu05g03479 712 Gene3D LysM domain 193 249 IPR036779 -
Tsu05g03479 712 PANTHER PROTEIN LYK5 20 657 - -
Tsu05g03479 712 Pfam LysM domain 195 238 IPR018392 -
Tsu05g03479 712 CDD LysM 194 230 IPR018392 -
Tsu05g03479 712 Gene3D Phosphorylase Kinase; domain 1 320 424 - -
Tsu05g03479 712 SMART LysM_2 126 174 IPR018392 -
Tsu05g03479 712 SMART LysM_2 194 238 IPR018392 -
Tsu05g03479 712 ProSiteProfiles LysM domain profile. 193 237 IPR018392 -
Tsu05g03479 712 SUPERFAMILY LysM domain 193 238 IPR036779 -
Tsu05g03479 712 ProSiteProfiles Protein kinase domain profile. 281 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03479 712 MobiDBLite consensus disorder prediction 304 325 - -
Tsu05g03479 712 MobiDBLite consensus disorder prediction 246 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03479 Tsu-Chr5 46264779 46267990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03479 8 659 Receptor kinase-like Gene Family AT2G33580 51.111 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu05g03479 Pkinase 9.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03479 - - gmx:100818534 845.884