Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03474 ATGTCCACAAAGGTTCTgtcttttcattttattctcatcATGTTTTTCAATTTACTTTCAAGCCTTTCTACCTTCCAAGTTTATGGCATTTTCACTTTTGCTGCCACTAATGCTACAAAAGATCAAGGTAGTGAAGCCATTGCTCTTTTAAATTGGAAAACCAACCTTGACAAACAAAGCCAAGCTTCCTTGTCTTCTTGGTCCATCAATTCAAGTCCTTGCAATTGGAGAGGAATTGTTTGTGATGAAAAAACCAATTATGTGACAATTATAGATGTTGCAAACTTTGGTCTTGAAGGTACTCTTTTAAGTCTCAACTTCTCATCTTTTCCTATGCTTCAAACTTTGGATATAAGTAACAACTTTTTTCATGGTACTATTCCACATCAAATTTGTAACTTGTCCAAAATTTCTAAACTAAAAATTGGTTATAACTTTTTCAATGGTTCCATTCCTCAAGAAATAGGGAAACTTAAAAATTTAAGTCACCTTGATATTGCCAAGTGTAAGCTCATTGGTTCCATTCCTTCAACAATTGGAATGTTGATAAATCTTGTTGAACTTGATTTATCAGCTAATTATCTCTCTGGCGAAATCCCTTCAATGAAAAACTTGATGAACTTAGAACAACTTGTTCTACACGGAAACTCTCTTTCTGGACCGATTCCTATGGATTTAAGCACAATCTCTTCTCTTAGAACAATTAAATTGTTAAGCAACAATTTTTCTGGTGAAATTCCATCTTCCATAGGAAACTTGAATAATTTGAGGATACTTCAGCTTAGTTATAATCAACTTTATGGATCAATTCCTTCTACTATTGGAAACTTAACAAAACTCATTGAATTATCACTTTCTCAAAACCAAATTTCTGGATCAATTCCATCTTCATTAGGAAACTTGATCAATCTAGAAAGACTTAGTCTTTCAGAAAATCAACTTTCTGGTCCTATTCCTTCAACCTTTGGAAATTTGACCAAACTAACCTTTCTATTACTTTACATGAACGAACTTAATGGTAGCATTTCACAAGCAATGAAAAACATTACCAATTTGAAAAGCTTACAACTAAGTTCAAATCATTTCATTGGCCAATTGCCACATCAAATTTGCCTTGGTGGTTCACTTAGAAATTTTTCTGCTAATGACAATCATTTCAGTGGTTTAGTTCCAATAACCTTGAAGAATTGTTCAAGCCTTGTTAGACTTAACCTTGCAGACAATATGTTGATTGGAAATATTTCAGATGAGTTTGGTGTATATCCAAATTTGAACTACATTTTTTTGAGTCACAACTACTTTTATGGCAAAATTTTGCCAAGTTGGATAAAAAGTCATAATCTAATTGGCCTAAGGATTTCAAATAACAATTTATCAGGTACTATACCTCCAGAACTAGGACAAGCACCTAAGTTACAATCACTTCAACTTTCTTCAAATCATCTAACAGGAAAAATTCCTAAAGAGCTTTGTAACTTGACTTCATTGTATGAACTCTCCATGAGTAACAATGAACTTTATGGAAACATTCCTTCAGAAATAGGATTCATGCAAGGACTTGGAAACTTGAATCTTGCAGAAAATAGTTTAAGTGGCTCAATTCCAAAACAAATTGGAAATCTTCTCAAACTAGTTCATTTGAATTTGAGCAATAATAAGTTCATGGAAGGAATTCCACATGAATTTAACAGATTGCAATCTCTTGAAGATCTTGATCTTGGTGGAAATTTGTTAAGTGGACATATACCAGAAGAAGTTGGAAAGTTGCAAAAGTTGAACACATTGAACCTTTCTCACAATAATCTCTCTGGAAATATTCCCTCTAATTTTGAAGATATGATTAGCTTGATAAATATTGACATATCTTATAACCAATTAGAGGGTCCAATTCCTAACACAATAGTGTTTCTTAATGCAACATTGAGAAACAATAAAGGCTTGTGTGGTAATTCTTCAAGCTTGGTTCCTTGTGTGGTAAGTCATcacaatacaaaaattaaacacaaaagTTTGATATTGACACTCTTTATATTGCTTATAGTCTTCTTGGTTGGTGGTTCTTTGTATATTCGTTGgaaaaaagcaagaaaaattaaaaaccaagcaagagaagaacaaaaacaaactcaAGATGTTTTTTCCATATGGAGTTATGATGGAAAAATGGTTTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGAGAAATATCTCATTGGTGAAGGAGGTTCTGGTTTTGTTTACAAGGTTAATTTACCTTCTGGTCAAGTTGTTGCCGTGAAAAAACTTCATGCTGAAGTTGATAGTGAAACGAACAATTTCACGGCTTTTACTAATGAGGTTAAAGCGTTGACGCAAATCAAACATCGTAACATTGTGAAGTTATATGGATTTTGTTCGCATCCGCGCCACTCTTTTGTGGTTTACGAGTTCTTAGAAGGAGGGAGTTTGGATAATGTGATGAGACTTGATACACAAGCAACAATGTTTGATTGGAAAAAGAGAGTGAATGTTGTTAAGGGTGTGACAAATGCTCTCTACCATATGCATCATGGTTGCTCTCCTCCTATTGTTCATCGTGACATATCGAGCAAAAATGTTCTTTTAGATTTGGATTGTGAAGCTTACATCTCAGACTTTGGAACTGCTAAGATTCTTAATCTTGATTCTCATAATTCAACAACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCATATACTAATGAAGTGACTGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTGTGTTTGGAAATAATTATAGGAAAGCATCCAGGGGATCTGATTTATACATTGTTTTCATCTTCTGAGGCACCAAAAGCATATAATTTGCTATTGAAAGATGTATTAGACCAAAGGCTTCCTCTTCCAGAAAATTCAGTTGCAAAGGATGTGATCTTGATTGCAAAAATGGGATTTGCTTGCTTGAGTGAAAATCCAGATTCTAGACCAACTATGGAGCAAGTGTACAACATGTTTGTAAtgtcaaaatcatcatcaatggAGACATTCCGGGTCATCACACTTGGTCAACTTTTAAATTAG 3078 0.3275 MSTKVLSFHFILIMFFNLLSSLSTFQVYGIFTFAATNATKDQGSEAIALLNWKTNLDKQSQASLSSWSINSSPCNWRGIVCDEKTNYVTIIDVANFGLEGTLLSLNFSSFPMLQTLDISNNFFHGTIPHQICNLSKISKLKIGYNFFNGSIPQEIGKLKNLSHLDIAKCKLIGSIPSTIGMLINLVELDLSANYLSGEIPSMKNLMNLEQLVLHGNSLSGPIPMDLSTISSLRTIKLLSNNFSGEIPSSIGNLNNLRILQLSYNQLYGSIPSTIGNLTKLIELSLSQNQISGSIPSSLGNLINLERLSLSENQLSGPIPSTFGNLTKLTFLLLYMNELNGSISQAMKNITNLKSLQLSSNHFIGQLPHQICLGGSLRNFSANDNHFSGLVPITLKNCSSLVRLNLADNMLIGNISDEFGVYPNLNYIFLSHNYFYGKILPSWIKSHNLIGLRISNNNLSGTIPPELGQAPKLQSLQLSSNHLTGKIPKELCNLTSLYELSMSNNELYGNIPSEIGFMQGLGNLNLAENSLSGSIPKQIGNLLKLVHLNLSNNKFMEGIPHEFNRLQSLEDLDLGGNLLSGHIPEEVGKLQKLNTLNLSHNNLSGNIPSNFEDMISLINIDISYNQLEGPIPNTIVFLNATLRNNKGLCGNSSSLVPCVVSHHNTKIKHKSLILTLFILLIVFLVGGSLYIRWKKARKIKNQAREEQKQTQDVFSIWSYDGKMVYENIIEATEDFDEKYLIGEGGSGFVYKVNLPSGQVVAVKKLHAEVDSETNNFTAFTNEVKALTQIKHRNIVKLYGFCSHPRHSFVVYEFLEGGSLDNVMRLDTQATMFDWKKRVNVVKGVTNALYHMHHGCSPPIVHRDISSKNVLLDLDCEAYISDFGTAKILNLDSHNSTTFAGTYGYAAPELAYTNEVTEKCDVFSFGVLCLEIIIGKHPGDLIYTLFSSSEAPKAYNLLLKDVLDQRLPLPENSVAKDVILIAKMGFACLSENPDSRPTMEQVYNMFVMSKSSSMETFRVITLGQLLN 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03474 1025 SUPERFAMILY Protein kinase-like (PK-like) 713 1004 IPR011009 -
Tsu05g03474 1025 ProSitePatterns Tyrosine protein kinases specific active-site signature. 858 870 IPR008266 GO:0004672|GO:0006468
Tsu05g03474 1025 Pfam Leucine rich repeat N-terminal domain 44 82 IPR013210 -
Tsu05g03474 1025 Gene3D Ribonuclease Inhibitor 371 658 IPR032675 -
Tsu05g03474 1025 SMART LRR_sd22_2 182 210 - -
Tsu05g03474 1025 SMART LRR_sd22_2 541 560 - -
Tsu05g03474 1025 SMART LRR_sd22_2 277 303 - -
Tsu05g03474 1025 SMART LRR_sd22_2 565 588 - -
Tsu05g03474 1025 SMART LRR_sd22_2 325 351 - -
Tsu05g03474 1025 SMART LRR_sd22_2 110 136 - -
Tsu05g03474 1025 Pfam Leucine rich repeat 255 314 IPR001611 GO:0005515
Tsu05g03474 1025 SUPERFAMILY L domain-like 66 411 - -
Tsu05g03474 1025 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 1023 - -
Tsu05g03474 1025 Gene3D Ribonuclease Inhibitor 268 370 IPR032675 -
Tsu05g03474 1025 Gene3D Phosphorylase Kinase; domain 1 693 812 - -
Tsu05g03474 1025 Pfam Protein kinase domain 736 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03474 1025 SMART LRR_typ_2 110 134 IPR003591 -
Tsu05g03474 1025 SMART LRR_typ_2 541 564 IPR003591 -
Tsu05g03474 1025 SMART LRR_typ_2 301 324 IPR003591 -
Tsu05g03474 1025 SMART LRR_typ_2 349 373 IPR003591 -
Tsu05g03474 1025 SMART LRR_typ_2 253 276 IPR003591 -
Tsu05g03474 1025 SMART LRR_typ_2 277 300 IPR003591 -
Tsu05g03474 1025 SMART LRR_typ_2 493 517 IPR003591 -
Tsu05g03474 1025 SMART LRR_typ_2 589 612 IPR003591 -
Tsu05g03474 1025 SMART LRR_typ_2 565 588 IPR003591 -
Tsu05g03474 1025 ProSiteProfiles Protein kinase domain profile. 734 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03474 1025 Gene3D Ribonuclease Inhibitor 42 201 IPR032675 -
Tsu05g03474 1025 Gene3D Transferase(Phosphotransferase) domain 1 813 1018 - -
Tsu05g03474 1025 SUPERFAMILY RNI-like 318 673 - -
Tsu05g03474 1025 ProSitePatterns Protein kinases ATP-binding region signature. 740 763 IPR017441 GO:0005524
Tsu05g03474 1025 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Tsu05g03474 1025 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 1023 - -
Tsu05g03474 1025 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515
Tsu05g03474 1025 Pfam Leucine Rich Repeat 471 493 IPR001611 GO:0005515
Tsu05g03474 1025 Gene3D Ribonuclease Inhibitor 202 267 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03474 Tsu-Chr5 46187646 46191022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03474 45 906 Receptor kinase-like Gene Family AT4G08850 43.646 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu05g03474 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03474 - - gmx:100800924 1270.37