Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03456 ATGCAACAACAAGTGGCATCAGAAGTTCAACATACccagttgaagaaaaaaaaccaagaaaCGCAGATGTGTAGGAAAATCAAACTAAGTATCTCTGATCATAACAACAACCTTAAAAACACCACAAccgttgatgatgatgatgatgtttgtgACAAAATAGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTGCTATGGTTGATAATGGCATTTTCCGCTCTGGTTTTCCTGAACCTTCCAACTTTTCATTCCTTCAAACCCTTGGCCTTCGCTCCATCATATATTTGTGTCCTGAACCATATCCAGAAGCTAACATGGAGTTTCTCAAGTCAAATGGGATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCATTTGTAAACATTCCAGAAGACACAATCCGGGAAGCGCTAAAAGTTCTTCTTGATGTAAGGAACCATCCAGTTATAATTCACTGTAAGCGAGGAAAGCACCGAACAGGTTGTTTAGTCGGATGCTATAGAAAACTACAAAAATGGTGTTTGTCATCTGTTTTCGATGAGTACCAGCGCTTTGCAGCTGCGAAAGCTCGAGTTTCAGATCAAAGGTTTGTAGAGTTGTTTGATATTTCAAGCTTGAAGCATTTGCCTATACCATTTTCATATTTGAAGCGGTAA 669 0.3677 MQQQVASEVQHTQLKKKNQETQMCRKIKLSISDHNNNLKNTTTVDDDDDVCDKIDGEDLFIPPLNFAMVDNGIFRSGFPEPSNFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSLKHLPIPFSYLKR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03456 222 ProSiteProfiles Dual specificity protein phosphatase domain profile. 65 219 IPR020422 GO:0006470|GO:0008138
Tsu05g03456 222 CDD PFA-DSP_Siw14 59 206 - -
Tsu05g03456 222 ProSitePatterns Tyrosine specific protein phosphatases active site. 155 165 IPR016130 GO:0016311|GO:0016791
Tsu05g03456 222 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Tsu05g03456 222 PRINTS Plant and fungal dual specificity phosphatase signature 133 147 IPR020428 GO:0016791
Tsu05g03456 222 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791
Tsu05g03456 222 PRINTS Plant and fungal dual specificity phosphatase signature 60 77 IPR020428 GO:0016791
Tsu05g03456 222 PRINTS Plant and fungal dual specificity phosphatase signature 97 110 IPR020428 GO:0016791
Tsu05g03456 222 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 61 207 IPR029021 -
Tsu05g03456 222 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 220 - -
Tsu05g03456 222 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 10 220 - -
Tsu05g03456 222 Pfam Tyrosine phosphatase family 61 212 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03456 Tsu-Chr5 46003291 46006516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03456 43 222 Protein tyrosine phosphatase (PTP) family AT4G03960 72.778 3.83e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03456 K18045 - gmx:100814279 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03456 05 46003291 46006516 Tsu05g03456 05 46003291 46006516 ECH