Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03454 ATGAGGCCAACAGACTTGCTTAGGGTTCTGAACAAGCAGTTTCTTGGAATCATTCCTGCTGCAAATCCTAAGAAGCTGACATCGTCGGCTCCTGTTGTGTCGCACAAACCAGCGTTTATAGATGCATTCCTGtacaaaatgaaaaagaatcCAGAACTTCTGAAGAACAAAACCATTTGGTCGCGGAGATCCACTATCTTGCCAGAATTTGTTGATTCCCAGGTCAAGATTTACAATGGGAAAACCATCATTCGCTGTAAGATCACTGAAGGAAAAGTGGGTCATAAGTTTGGTGAGTTCGCTCTCACCAGGAAACGCAAATCCAAAGACCAACCTAATGCAAAAGTTAAACAACTCAAGAAAaagaagtga 372 0.4005 MRPTDLLRVLNKQFLGIIPAANPKKLTSSAPVVSHKPAFIDAFLYKMKKNPELLKNKTIWSRRSTILPEFVDSQVKIYNGKTIIRCKITEGKVGHKFGEFALTRKRKSKDQPNAKVKQLKKKK 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03454 123 PANTHER 40S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL 19 118 - -
Tsu05g03454 123 Pfam Ribosomal protein S19 46 107 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu05g03454 123 SUPERFAMILY Ribosomal protein S19 35 108 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tsu05g03454 123 Hamap 30S ribosomal protein S19 [rpsS]. 6 115 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu05g03454 123 ProSitePatterns Ribosomal protein S19 signature. 79 103 IPR020934 GO:0003723
Tsu05g03454 123 MobiDBLite consensus disorder prediction 104 123 - -
Tsu05g03454 123 PRINTS Ribosomal protein S19 family signature 79 91 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu05g03454 123 PRINTS Ribosomal protein S19 family signature 91 106 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu05g03454 123 PRINTS Ribosomal protein S19 family signature 59 78 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu05g03454 123 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 19 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu05g03454 123 Gene3D 30s Ribosomal Protein S19; Chain A 1 121 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03454 Tsu-Chr5 45974834 45978133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03454 51 113 Cytoplasmic Ribosomal Protein Gene Family AT5G09490 31.746 5.34e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03454 K02965 - gmx:100305608 186.037